RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 LXNQ9BS40 222 aa13.17□□□□□ -0.3
SNHG1-221ENST00000544983 FTOQ9C0B1 505 aaKnown RBP eCLIP13.17□□□□□ -0.3
SNHG1-221ENST00000544983 NT5C3AQ9H0P0 336 aa13.17□□□□□ -0.3
SNHG1-221ENST00000544983 FBXO2Q9UK22 296 aaPredicted RBP13.17□□□□□ -0.3
SNHG1-221ENST00000544983 DCDC2CA8MYV0 355 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 TLR3O15455 904 aaKnown RBP13.16□□□□□ -0.3
SNHG1-221ENST00000544983 OATP04181 439 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 NCLP19338 710 aaKnown RBP13.16□□□□□ -0.3
SNHG1-221ENST00000544983 MARCKSP29966 332 aaPredicted RBP13.16□□□□□ -0.3
SNHG1-221ENST00000544983 HOXC8P31273 242 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 UBA7P41226 1012 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 PRKCEQ02156 737 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 PLCB4Q15147 1175 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 FOXD4L6Q3SYB3 417 aaPredicted RBP13.16□□□□□ -0.3
SNHG1-221ENST00000544983 ZNF484Q5JVG2 852 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 HABP4Q5JVS0 413 aaKnown RBP13.16□□□□□ -0.3
SNHG1-221ENST00000544983 FOXD4L3Q6VB84 417 aaPredicted RBP13.16□□□□□ -0.3
SNHG1-221ENST00000544983 NACC1Q96RE7 527 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 NIFKQ9BYG3 293 aaKnown RBP13.16□□□□□ -0.3
SNHG1-221ENST00000544983 CCSER1Q9C0I3 900 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 RNPEPQ9H4A4 650 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 ANKEF1Q9NU02 776 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 GTF2IRD1Q9UHL9 959 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 TRPC6Q9Y210 931 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 TELO2Q9Y4R8 837 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 KAT6AQ92794 2004 aa13.16□□□□□ -0.3
SNHG1-221ENST00000544983 GRIN2DO15399 1336 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 WDR81Q562E7 1941 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 C17orf102A2RUQ5 167 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 MAGEB2O15479 319 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 ZNF862O60290 1169 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 SMIM10L2AP0DMW4 78 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 SMIM10L2BP0DMW5 78 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 CCT6AP40227 531 aaKnown RBP13.15□□□□□ -0.3
SNHG1-221ENST00000544983 ME1P48163 572 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 PSMC6P62333 389 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 PPFIA1Q13136 1202 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 HYIQ5T013 277 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 CATSPER3Q86XQ3 398 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 TPH2Q8IWU9 490 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 ZNF710Q8N1W2 664 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 BANK1Q8NDB2 785 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 SNX29Q8TEQ0 813 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 LEO1Q8WVC0 666 aaPredicted RBP13.15□□□□□ -0.3
SNHG1-221ENST00000544983 CALML4Q96GE6 196 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 DYDC2Q96IM9 177 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 JPH2Q9BR39 696 aaPredicted RBP13.15□□□□□ -0.3
SNHG1-221ENST00000544983 RGL1Q9NZL6 768 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 HDAC6Q9UBN7 1215 aa13.15□□□□□ -0.3
SNHG1-221ENST00000544983 SPATA31C1P0DKV0 1188 aa13.14□□□□□ -0.31
SNHG1-221ENST00000544983 INSRRP14616 1297 aa13.14□□□□□ -0.31
SNHG1-221ENST00000544983 ATP4AP20648 1035 aa13.14□□□□□ -0.31
SNHG1-221ENST00000544983 MARK3P27448 753 aa13.14□□□□□ -0.31
SNHG1-221ENST00000544983 YWHABP31946 246 aaKnown RBP13.14□□□□□ -0.31
SNHG1-221ENST00000544983 ATN1P54259 1190 aaPredicted RBP13.14□□□□□ -0.31
SNHG1-221ENST00000544983 ADAM17P78536 824 aa13.14□□□□□ -0.31
SNHG1-221ENST00000544983 CYP4A11Q02928 519 aa13.14□□□□□ -0.31
SNHG1-221ENST00000544983 GRIK4Q16099 956 aa13.14□□□□□ -0.31
SNHG1-221ENST00000544983 UGCGQ16739 394 aa13.14□□□□□ -0.31
SNHG1-221ENST00000544983 FAM47CQ5HY64 1035 aa13.14□□□□□ -0.31
SNHG1-221ENST00000544983 TAF2Q6P1X5 1199 aa13.14□□□□□ -0.31
SNHG1-221ENST00000544983 CDK5RAP3Q96JB5 506 aa13.14□□□□□ -0.31
SNHG1-221ENST00000544983 PYM1Q9BRP8 204 aaKnown RBP13.14□□□□□ -0.31
SNHG1-221ENST00000544983 CSRNP2Q9H175 543 aa13.14□□□□□ -0.31
SNHG1-221ENST00000544983 CCDC39Q9UFE4 941 aa13.14□□□□□ -0.31
SNHG1-221ENST00000544983 DBR1Q9UK59 544 aaKnown RBP13.14□□□□□ -0.31
SNHG1-221ENST00000544983 NOD1Q9Y239 953 aa13.14□□□□□ -0.31
SNHG1-221ENST00000544983 DNAH12Q6ZR08 3092 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 MBLAC1A4D2B0 266 aaPredicted RBP13.13□□□□□ -0.31
SNHG1-221ENST00000544983 DDX11L8A8MPP1 907 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 GAS2O43903 313 aaKnown RBP13.13□□□□□ -0.31
SNHG1-221ENST00000544983 CAND2O75155 1236 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 MED24O75448 989 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 CD4P01730 458 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 RTP1P59025 263 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 CHMP4BP1P59074 171 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 CTTNQ14247 550 aaKnown RBP13.13□□□□□ -0.31
SNHG1-221ENST00000544983 TARBP2Q15633 366 aaKnown RBP13.13□□□□□ -0.31
SNHG1-221ENST00000544983 PTGISQ16647 500 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 AXDND1Q5T1B0 1012 aaPredicted RBP13.13□□□□□ -0.31
SNHG1-221ENST00000544983 ADALQ6DHV7 355 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 CLEC17AQ6ZS10 378 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 CABP7Q86V35 215 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 FAM126BQ8IXS8 530 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 CCDC155Q8N6L0 562 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 RETREG2Q8NC44 543 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 CCDC43Q96MW1 224 aaKnown RBP13.13□□□□□ -0.31
SNHG1-221ENST00000544983 MMTAG2Q9BU76 263 aaKnown RBP13.13□□□□□ -0.31
SNHG1-221ENST00000544983 SETD4Q9NVD3 440 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 PCDHA7Q9UN72 937 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 DNM3Q9UQ16 869 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 TCHHQ07283 1943 aa13.13□□□□□ -0.31
SNHG1-221ENST00000544983 PQBP1O60828 265 aaKnown RBP13.12□□□□□ -0.31
SNHG1-221ENST00000544983 STBD1O95210 358 aa13.12□□□□□ -0.31
SNHG1-221ENST00000544983 TMOD1P28289 359 aa13.12□□□□□ -0.31
SNHG1-221ENST00000544983 RFC5P40937 340 aa13.12□□□□□ -0.31
SNHG1-221ENST00000544983 CDC42EP1Q00587 391 aa13.12□□□□□ -0.31
SNHG1-221ENST00000544983 TLE2Q04725 743 aa13.12□□□□□ -0.31
SNHG1-221ENST00000544983 TBC1D8BQ0IIM8 1120 aa13.12□□□□□ -0.31
SNHG1-221ENST00000544983 PTK7Q13308 1070 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms