RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 DYDC2Q96IM9 177 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 KCNK9Q9NPC2 374 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 SPATS2LQ9NUQ6 558 aaKnown RBP6.29□□□□□ -1.4
VPS50-220ENST00000544910 KBTBD4Q9NVX7 518 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 BCL9LQ86UU0 1499 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 H0YCG3 227 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 SLC37A4O43826 429 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 IL1R1P14778 569 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 POLD1P28340 1107 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 WDR78Q5VTH9 848 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 CDAN1Q8IWY9 1227 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 EFCAB13Q8IY85 973 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 TCHPQ9BT92 498 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 FEM1BQ9UK73 627 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 RRP15Q9Y3B9 282 aaKnown RBP6.29□□□□□ -1.4
VPS50-220ENST00000544910 FHOD1Q9Y613 1164 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 GJA3Q9Y6H8 435 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 FAM196BA6NMK8 535 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 ZNF185O15231 689 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 LUC7L3O95232 432 aaKnown RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 CCND2P30279 289 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 GCKP35557 465 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 KRT71Q3SY84 523 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 TTC19Q6DKK2 380 aaPredicted RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 CALR3Q96L12 384 aaKnown RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 ERGIC2Q96RQ1 377 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 EIF2AK1Q9BQI3 630 aaKnown RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 VIPAS39Q9H9C1 493 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 ASIC3Q9UHC3 531 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 ADAM21Q9UKJ8 722 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 SNX12Q9UMY4 172 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 ABCB11O95342 1321 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 NOL3O60936 208 aaKnown RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 FGRP09769 529 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 ZSCAN20P17040 1043 aaPredicted RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 HERVK_113P62684 666 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 NNTQ13423 1086 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 RSRC2Q7L4I2 434 aaKnown RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 LRRN4CLQ8ND94 238 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 PCIF1Q9H4Z3 704 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 NDC80O14777 642 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 MMP10P09238 476 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 HARSP12081 509 aaKnown RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 HNRNPH2P55795 449 aaKnown RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 TXNRD3Q86VQ6 643 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 PIGOQ8TEQ8 1089 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 HNRNPLLQ8WVV9 542 aaKnown RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 TUFT1Q9NNX1 390 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 UBE2TQ9NPD8 197 aaPredicted RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 NYAP2Q9P242 653 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 IKBKGQ9Y6K9 419 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 MYO3BQ8WXR4 1341 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 SFI1A8K8P3 1242 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 TBX3O15119 743 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 CYP2C19P33261 490 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 LIG4P49917 911 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 CDK17Q00537 523 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 KCTD16Q68DU8 428 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 TTI2Q6NXR4 508 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 ZNF365Q70YC5 407 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 TRAPPC11Q7Z392 1133 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 STMN2Q93045 179 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 C1orf112Q9NSG2 853 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 ADAMTS1Q9UHI8 967 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 NFU1Q9UMS0 254 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 DUOX1Q9NRD9 1551 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 BMP6P22004 513 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 AOC3Q16853 763 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 ALKBH5Q6P6C2 394 aaKnown RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 PPM1KQ8N3J5 372 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 BCAS4Q8TDM0 211 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 SREK1Q8WXA9 508 aaKnown RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 AP1M1Q9BXS5 423 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 PPANQ9NQ55 473 aaKnown RBP6.28□□□□□ -1.4
VPS50-220ENST00000544910 INTS13Q9NVM9 706 aa6.28□□□□□ -1.4
VPS50-220ENST00000544910 TCHHQ07283 1943 aa6.27□□□□□ -1.4
VPS50-220ENST00000544910 SSU72P8A0A1W2PR75 194 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 F5H6K3 240 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 PDXKO00764 312 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 EYA4O95677 639 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 VIMP08670 466 aaKnown RBP6.27□□□□□ -1.41
VPS50-220ENST00000544910 TNNI1P19237 187 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 PIK3CAP42336 1068 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 KLRC3Q07444 240 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 TRPC3Q13507 836 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 GNPTABQ3T906 1256 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 ADAT2Q7Z6V5 191 aaKnown RBP6.27□□□□□ -1.41
VPS50-220ENST00000544910 CLEC10AQ8IUN9 316 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 CCDC110Q8TBZ0 833 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 SYN2Q92777 582 aaPredicted RBP6.27□□□□□ -1.41
VPS50-220ENST00000544910 INTS2Q9H0H0 1204 aaKnown RBP6.27□□□□□ -1.41
VPS50-220ENST00000544910 DNAJC12Q9UKB3 198 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 AGTPBP1Q9UPW5 1226 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 USTQ9Y2C2 406 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 PASKQ96RG2 1323 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 RGS16O15492 202 aaPredicted RBP6.27□□□□□ -1.41
VPS50-220ENST00000544910 LRRN2O75325 713 aa6.27□□□□□ -1.41
VPS50-220ENST00000544910 PMS1P54277 932 aaKnown RBP6.27□□□□□ -1.41
VPS50-220ENST00000544910 INTS8Q75QN2 995 aaKnown RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms