RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 DISC1Q9NRI5 854 aa12.92□□□□□ -0.34
YBX3-216ENST00000544622 DDX25Q9UHL0 483 aaKnown RBP12.92□□□□□ -0.34
YBX3-216ENST00000544622 UNC80Q8N2C7 3258 aa12.92□□□□□ -0.34
YBX3-216ENST00000544622 IGSF9BQ9UPX0 1349 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 VCANP13611 3396 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 ABHD14A-ACY1A0A1B0GW23 586 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 FAM205CA6NFA0 338 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 BACH1O14867 736 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 TBX3O15119 743 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 ZNF862O60290 1169 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 GAS7O60861 476 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 CD2BP2O95400 341 aaKnown RBP12.91□□□□□ -0.34
YBX3-216ENST00000544622 PSAPP07602 524 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 GCFC2P16383 781 aaKnown RBP12.91□□□□□ -0.34
YBX3-216ENST00000544622 SFNP31947 248 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 WDR5P61964 334 aaKnown RBP12.91□□□□□ -0.34
YBX3-216ENST00000544622 ZNF697Q5TEC3 545 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 LRCH2Q5VUJ6 765 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 PDXDC2PQ6P474 469 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 MTHFD1LQ6UB35 978 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 DIS3L2Q8IYB7 885 aaKnown RBP12.91□□□□□ -0.34
YBX3-216ENST00000544622 DBF4BQ8NFT6 615 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 RDM1Q8NG50 284 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 DNAJB3Q8WWF6 145 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 TIFAQ96CG3 184 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 FAM20AQ96MK3 541 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 BACH2Q9BYV9 841 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 GABBR1Q9UBS5 961 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 TRPC6Q9Y210 931 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 YBX2Q9Y2T7 364 aaKnown RBP12.91□□□□□ -0.34
YBX3-216ENST00000544622 COL1A2P08123 1366 aa12.91□□□□□ -0.34
YBX3-216ENST00000544622 SMIM35A0A1B0GVV1 85 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 CCNT1O60563 726 aaKnown RBP12.9□□□□□ -0.34
YBX3-216ENST00000544622 STBD1O95210 358 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 RPLP2P05387 115 aaKnown RBP12.9□□□□□ -0.34
YBX3-216ENST00000544622 ATP2A2P16615 1042 aaKnown RBP12.9□□□□□ -0.34
YBX3-216ENST00000544622 KLRC1P26715 233 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 JAK3P52333 1124 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 IGBP1P78318 339 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 HMGN5P82970 282 aaKnown RBP12.9□□□□□ -0.34
YBX3-216ENST00000544622 ZNF484Q5JVG2 852 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 FBXO18Q8NFZ0 1043 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 TRAPPC12Q8WVT3 735 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 CEP89Q96ST8 783 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 SLC9A7Q96T83 725 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 NAP1L4Q99733 375 aaKnown RBP12.9□□□□□ -0.34
YBX3-216ENST00000544622 TEKT3Q9BXF9 490 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 ZNF576Q9H609 170 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 UPF2Q9HAU5 1272 aaKnown RBP12.9□□□□□ -0.34
YBX3-216ENST00000544622 VAV3Q9UKW4 847 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 PCDHA11Q9Y5I1 949 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 XIRP2A4UGR9 3374 aa12.9□□□□□ -0.34
YBX3-216ENST00000544622 PRUNE2Q8WUY3 3088 aa12.9□□□□□ -0.35
YBX3-216ENST00000544622 A0A0C4DFX4 3053 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 ZBBXA8MT70 800 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 WNT7AO00755 349 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 ST18O60284 1047 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 EFCAB14O75071 495 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 C22orf31O95567 290 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 CTSHP09668 335 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 RABGGTBP53611 331 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 SPIRE1Q08AE8 756 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 PPP2R5CQ13362 524 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 IKBKEQ14164 716 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 RAB30Q15771 203 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 UGCGQ16739 394 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 KIAA0319LQ8IZA0 1049 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 NME8Q8N427 588 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 TMX3Q96JJ7 454 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 FAM161BQ96MY7 647 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 BRMS1Q9HCU9 246 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 STXBP5LQ9Y2K9 1186 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 SQORQ9Y6N5 450 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 KAT6AQ92794 2004 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 TRANK1O15050 2925 aa12.89□□□□□ -0.35
YBX3-216ENST00000544622 KDM3AQ9Y4C1 1321 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.88□□□□□ -0.35
YBX3-216ENST00000544622 EML1O00423 815 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 OATP04181 439 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 MYOGP15173 224 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 DEFB103AP81534 67 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 TRIM29Q14134 588 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 LPIN1Q14693 890 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 GRIN2CQ14957 1233 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 TARBP2Q15633 366 aaKnown RBP12.88□□□□□ -0.35
YBX3-216ENST00000544622 FBXO47Q5MNV8 452 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.88□□□□□ -0.355e-7■■□□□ 13
YBX3-216ENST00000544622 RSPH3Q86UC2 560 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 HERC6Q8IVU3 1022 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 LINC01465Q8N7H1 131 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 C8orf76Q96K31 380 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 MTMR9Q96QG7 549 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 CDX2Q99626 313 aaPredicted RBP12.88□□□□□ -0.35
YBX3-216ENST00000544622 NIFKQ9BYG3 293 aaKnown RBP12.88□□□□□ -0.35
YBX3-216ENST00000544622 FOXP1Q9H334 677 aaPredicted RBP12.88□□□□□ -0.35
YBX3-216ENST00000544622 MSRAQ9UJ68 235 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 SAMM50Q9Y512 469 aa12.88□□□□□ -0.35
YBX3-216ENST00000544622 CHMP2AO43633 222 aa12.87□□□□□ -0.35
YBX3-216ENST00000544622 GJB5O95377 273 aa12.87□□□□□ -0.35
YBX3-216ENST00000544622 MCM2P49736 904 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms