RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	SAMM50	Q9Y512	469 aa		10.65	□□□□□ -0.7
YBX3-215	ENST00000544504	FRMPD3	Q5JV73	1810 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	DHX15	O43143	795 aa	Known RBP	10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	SEPT4	O43236	478 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	RGS20	O76081	388 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	IGHA2	P01877	340 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	P4HB	P07237	508 aa	Known RBP	10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	PSAP	P07602	524 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	CLTB	P09497	229 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	RAG1	P15918	1043 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	ITGB8	P26012	769 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	ADCYAP1R1	P41586	468 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	TLE2	Q04725	743 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	FPGS	Q05932	587 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	SEMA3F	Q13275	785 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	ITGB3BP	Q13352	177 aa	Predicted RBP	10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	ZRSR1	Q15695	479 aa	Known RBP	10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	IQSEC1	Q6DN90	963 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	B3GNT9	Q6UX72	402 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	KRBA2	Q6ZNG9	492 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	PDILT	Q8N807	584 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	UNC45A	Q9H3U1	944 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	PCDHA10	Q9Y5I2	948 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	KIAA1217	Q5T5P2	1943 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	LRRC37A2	A6NM11	1700 aa		10.64	□□□□□ -0.71
YBX3-215	ENST00000544504	KIAA0355	O15063	1070 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	SMC2	O95347	1197 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	MYCN	P04198	464 aa	Predicted RBP	10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	TXN	P10599	105 aa	Known RBP	10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	ACVR2B	Q13705	512 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	LAMC2	Q13753	1193 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	TMEM119	Q4V9L6	283 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	MIS18BP1	Q6P0N0	1132 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	CCDC62	Q6P9F0	684 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	METTL7B	Q6UX53	244 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	USP49	Q70CQ1	688 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	DHX37	Q8IY37	1157 aa	Known RBP	10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	NPLOC4	Q8TAT6	608 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	ATP6V0A1	Q93050	837 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	CCDC47	Q96A33	483 aa	Known RBP	10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	DHX58	Q96C10	678 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	ZFP91	Q96JP5	570 aa	Predicted RBP	10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	EIF2AK1	Q9BQI3	630 aa	Known RBP	10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	GTPBP4	Q9BZE4	634 aa	Known RBP	10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	ZSWIM4	Q9H7M6	989 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	MLXIP	Q9HAP2	919 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	PKD2L1	Q9P0L9	805 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	DDX41	Q9UJV9	622 aa	Known RBP	10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	DNM3	Q9UQ16	869 aa		10.63	□□□□□ -0.71
YBX3-215	ENST00000544504	PP2D1	A8MPX8	630 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	DDX39A	O00148	427 aa	Known RBP	10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	NOP56	O00567	594 aa	Known RBP	10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	CHMP2A	O43633	222 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	ACTN4	O43707	911 aa	Known RBP	10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	ATP9A	O75110	1047 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	LYPLA2	O95372	231 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	GGPS1	O95749	300 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	SNAI1	O95863	264 aa	Predicted RBP	10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	GH1	P01241	217 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	XRCC6	P12956	609 aa	Known RBP eCLIP	10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	PLCG1	P19174	1290 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	UBA1	P22314	1058 aa	Known RBP	10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	CDC25A	P30304	524 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	QARS	P47897	775 aa	Known RBP	10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	KARS	Q15046	597 aa	Known RBP	10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	LRRC41	Q15345	812 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	E2F4	Q16254	413 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	LONRF3	Q496Y0	759 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	BRDT	Q58F21	947 aa	Predicted RBP	10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	FAM160B1	Q5W0V3	765 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	SV2B	Q7L1I2	683 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	EEPD1	Q7L9B9	569 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	FBXO16	Q8IX29	292 aa	Predicted RBP	10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	GJA10	Q969M2	543 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	EMID1	Q96A84	441 aa	Predicted RBP	10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	NACC1	Q96RE7	527 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	HSD17B14	Q9BPX1	270 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	MMTAG2	Q9BU76	263 aa	Known RBP	10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	PANK2	Q9BZ23	570 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	PRDM12	Q9H4Q4	367 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	TMEM63C	Q9P1W3	806 aa		10.62	□□□□□ -0.71
YBX3-215	ENST00000544504	EML1	O00423	815 aa		10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	SLITRK3	O94933	977 aa		10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	ATG7	O95352	703 aa		10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	ACTR2	P61160	394 aa		10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	PSMC5	P62195	406 aa		10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	GRB10	Q13322	594 aa		10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	POSTN	Q15063	836 aa		10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	DUSP28	Q4G0W2	176 aa		10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	CELF3	Q5SZQ8	465 aa	Known RBP	10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	TAPT1	Q6NXT6	567 aa		10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	PDXDC2P	Q6P474	469 aa		10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	RBM43	Q6ZSC3	357 aa	Known RBP	10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	CYFIP1	Q7L576	1253 aa		10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	OTUD6A	Q7L8S5	288 aa		10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	CATSPER3	Q86XQ3	398 aa		10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	C4orf19	Q8IY42	314 aa		10.61	□□□□□ -0.71
YBX3-215	ENST00000544504	SEPT1	Q8WYJ6	367 aa		10.61	□□□□□ -0.71

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