RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 VAV2P52735 878 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 AMPD2Q01433 879 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 ARID5AQ03989 594 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 NACC1Q96RE7 527 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 PARD6BQ9BYG5 372 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 MTFR1LQ9H019 292 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 SLC38A10Q9HBR0 1119 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 ARGLU1Q9NWB6 273 aaPredicted RBP17.97■□□□□ 0.47
COL4A1-204ENST00000543140 CEP72Q9P209 647 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 PCDHA13Q9Y5I0 950 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 MYH11P35749 1972 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 SRGAP2O75044 1071 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 AKAP3O75969 853 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 SEC31AO94979 1220 aaKnown RBP17.97■□□□□ 0.47
COL4A1-204ENST00000543140 ENOX2Q16206 610 aaKnown RBP17.97■□□□□ 0.47
COL4A1-204ENST00000543140 TDRD12Q587J7 1177 aaKnown RBP17.97■□□□□ 0.47
COL4A1-204ENST00000543140 DCAF17Q5H9S7 520 aaPredicted RBP17.97■□□□□ 0.47
COL4A1-204ENST00000543140 ZKSCAN4Q969J2 545 aaPredicted RBP17.97■□□□□ 0.47
COL4A1-204ENST00000543140 RPAP3Q9H6T3 665 aaPredicted RBP17.97■□□□□ 0.47
COL4A1-204ENST00000543140 TYW1Q9NV66 732 aaKnown RBP17.97■□□□□ 0.47
COL4A1-204ENST00000543140 FAM184BQ9ULE4 1060 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 EIF2AK2P19525 551 aaKnown RBP17.96■□□□□ 0.47
COL4A1-204ENST00000543140 GFPT1Q06210 699 aaPredicted RBP17.96■□□□□ 0.47
COL4A1-204ENST00000543140 EPHA7Q15375 998 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 TRMT1LQ7Z2T5 733 aaKnown RBP17.96■□□□□ 0.47
COL4A1-204ENST00000543140 WNK4Q96J92 1243 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 PKNOX2Q96KN3 472 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 PURBQ96QR8 312 aaKnown RBP17.96■□□□□ 0.47
COL4A1-204ENST00000543140 PARVGQ9HBI0 331 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 CTDP1Q9Y5B0 961 aaPredicted RBP17.96■□□□□ 0.47
COL4A1-204ENST00000543140 TLR2O60603 784 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 ACTN1P12814 892 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 GAP43P17677 238 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 TUBB2AQ13885 445 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 SFMBT2Q5VUG0 894 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 TCERG1LQ5VWI1 586 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 TMCO3Q6UWJ1 677 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 ZNF662Q6ZS27 426 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 MAEAQ7L5Y9 396 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 SYTL5Q8TDW5 730 aaPredicted RBP17.96■□□□□ 0.47
COL4A1-204ENST00000543140 TAAR1Q96RJ0 339 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 TUBB2BQ9BVA1 445 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 OLFML3Q9NRN5 406 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 SAMM50Q9Y512 469 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 PCDHB13Q9Y5F0 798 aa17.96■□□□□ 0.47
COL4A1-204ENST00000543140 TGFB1I1O43294 461 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 RPS6P62753 249 aaKnown RBP17.95■□□□□ 0.46
COL4A1-204ENST00000543140 MRPS9P82933 396 aaKnown RBP17.95■□□□□ 0.46
COL4A1-204ENST00000543140 BMT2Q1RMZ1 405 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 HGSNATQ68CP4 663 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 B3GNT9Q6UX72 402 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 FRMD5Q7Z6J6 570 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 MCF2L2Q86YR7 1114 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 ANKRD13CQ8N6S4 541 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 EHBP1Q8NDI1 1231 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 RIT2Q99578 217 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 EDEM3Q9BZQ6 932 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 RPTORQ8N122 1335 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 SLC9A1P19634 815 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 RAPGEF1Q13905 1077 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 COG2Q14746 738 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 WHAMMP3Q1A5X7 153 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 TKFCQ3LXA3 575 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 MIER3Q7Z3K6 550 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 SECISBP2LQ93073 1101 aaKnown RBP17.95■□□□□ 0.46
COL4A1-204ENST00000543140 MLXIPQ9HAP2 919 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 PPP1R9AQ9ULJ8 1098 aa17.95■□□□□ 0.46
COL4A1-204ENST00000543140 MYCLP12524 364 aaPredicted RBP17.94■□□□□ 0.46
COL4A1-204ENST00000543140 XRCC5P13010 732 aaKnown RBP17.94■□□□□ 0.46
COL4A1-204ENST00000543140 ITGB3BPQ13352 177 aaPredicted RBP17.94■□□□□ 0.46
COL4A1-204ENST00000543140 R3HDM1Q15032 1099 aaKnown RBP17.94■□□□□ 0.46
COL4A1-204ENST00000543140 TRAPPC11Q7Z392 1133 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 KCTD17Q8N5Z5 321 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 CAPZA3Q96KX2 299 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 SH2D3AQ9BRG2 576 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 FRMPD4Q14CM0 1322 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 ZMYM2Q9UBW7 1377 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 CTAGE15A4D2H0 777 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 ARHGEF35A5YM69 484 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 USO1O60763 962 aaKnown RBP17.94■□□□□ 0.46
COL4A1-204ENST00000543140 RHOXF2BP0C7M4 288 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 CTAGE8P0CG41 777 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 RPL13P26373 211 aaKnown RBP17.94■□□□□ 0.46
COL4A1-204ENST00000543140 PLS1Q14651 629 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 ODR4Q5SWX8 454 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 NSMFQ6X4W1 530 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 CTAGE6Q86UF2 777 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 CTAGE4Q8IX94 777 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 FAM178BQ8IXR5 827 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 DRC1Q96MC2 740 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 RHOXF2Q9BQY4 288 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 SAR1BQ9Y6B6 198 aa17.94■□□□□ 0.46
COL4A1-204ENST00000543140 DHX15O43143 795 aaKnown RBP17.93■□□□□ 0.46
COL4A1-204ENST00000543140 AFPP02771 609 aaKnown RBP17.93■□□□□ 0.46
COL4A1-204ENST00000543140 MAGEA1P43355 309 aa17.93■□□□□ 0.46
COL4A1-204ENST00000543140 MTMR1Q13613 665 aa17.93■□□□□ 0.46
COL4A1-204ENST00000543140 SLC9C1Q4G0N8 1177 aa17.93■□□□□ 0.46
COL4A1-204ENST00000543140 FAM133AQ8N9E0 248 aa17.93■□□□□ 0.46
COL4A1-204ENST00000543140 ATG4CQ96DT6 458 aa17.93■□□□□ 0.46
COL4A1-204ENST00000543140 TRERF1Q96PN7 1200 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms