RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-210	ENST00000543016	TELO2	Q9Y4R8	837 aa		13.65	□□□□□ -0.22
DDX55-210	ENST00000543016	COL1A2	P08123	1366 aa		13.65	□□□□□ -0.22
DDX55-210	ENST00000543016	SCN10A	Q9Y5Y9	1956 aa		13.65	□□□□□ -0.22
DDX55-210	ENST00000543016	OAT	P04181	439 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	ME1	P48163	572 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	CDK7	P50613	346 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	SOX10	P56693	466 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	PLCB4	Q15147	1175 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	HYI	Q5T013	277 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	ANKRD33	Q7Z3H0	272 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	TRIM50	Q86XT4	487 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	TPH2	Q8IWU9	490 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	CKAP2L	Q8IYA6	745 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	SNX29	Q8TEQ0	813 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	CALML4	Q96GE6	196 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	NACC1	Q96RE7	527 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	LXN	Q9BS40	222 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	NIFK	Q9BYG3	293 aa	Known RBP	13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	CCSER1	Q9C0I3	900 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	ANKEF1	Q9NU02	776 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	TRPC6	Q9Y210	931 aa		13.64	□□□□□ -0.23
DDX55-210	ENST00000543016	TLR3	O15455	904 aa	Known RBP	13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	SPATA31C1	P0DKV0	1188 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	HOXC8	P31273	242 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	CCT6A	P40227	531 aa	Known RBP	13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	PRKCE	Q02156	737 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	PPFIA1	Q13136	1202 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	ADAL	Q6DHV7	355 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	CLEC17A	Q6ZS10	378 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	CATSPER3	Q86XQ3	398 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	BANK1	Q8NDB2	785 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	DIS3L	Q8TF46	1054 aa	Known RBP	13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	DYDC2	Q96IM9	177 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	CDK5RAP3	Q96JB5	506 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	JPH2	Q9BR39	696 aa	Predicted RBP	13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	PYM1	Q9BRP8	204 aa	Known RBP	13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	CSRNP2	Q9H175	543 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	RNPEP	Q9H4A4	650 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	RGL1	Q9NZL6	768 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	CCDC39	Q9UFE4	941 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	GTF2IRD1	Q9UHL9	959 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	GRIN2D	O15399	1336 aa		13.63	□□□□□ -0.23
DDX55-210	ENST00000543016	DOCK5	Q9H7D0	1870 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	C17orf102	A2RUQ5	167 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	DCDC2C	A8MYV0	355 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	MAGEB2	O15479	319 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	ZNF862	O60290	1169 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	SMIM10L2A	P0DMW4	78 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	SMIM10L2B	P0DMW5	78 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	ATP4A	P20648	1035 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	YWHAB	P31946	246 aa	Known RBP	13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	PSMC6	P62333	389 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	CYP4A11	Q02928	519 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	CTTN	Q14247	550 aa	Known RBP	13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	CABP7	Q86V35	215 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	ZNF710	Q8N1W2	664 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	HDAC6	Q9UBN7	1215 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	DBR1	Q9UK59	544 aa	Known RBP	13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	PCDHA7	Q9UN72	937 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	DNM3	Q9UQ16	869 aa		13.62	□□□□□ -0.23
DDX55-210	ENST00000543016	MYH15	Q9Y2K3	1946 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016		A0A1W2PQ27	194 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016		A0A1W2PQ64	194 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016		A0A1W2PQD8	194 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	DDX11L8	A8MPP1	907 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	MED24	O75448	989 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	STBD1	O95210	358 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	INSRR	P14616	1297 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	MARK3	P27448	753 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	GRIK4	Q16099	956 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	UGCG	Q16739	394 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	FAM47C	Q5HY64	1035 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	TAF2	Q6P1X5	1199 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	CCDC73	Q6ZRK6	1079 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	MMTAG2	Q9BU76	263 aa	Known RBP	13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	FAM13B	Q9NYF5	915 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	KIAA1024	Q9UPX6	916 aa		13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	MYH9	P35579	1960 aa	Known RBP	13.61	□□□□□ -0.23
DDX55-210	ENST00000543016	MBLAC1	A4D2B0	266 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	GOLGA6L4	A6NEF3	574 aa		13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	GAS2	O43903	313 aa	Known RBP	13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	CAND2	O75155	1236 aa		13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	CMA1	P23946	247 aa		13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	RFC5	P40937	340 aa		13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	RGS19	P49795	217 aa		13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	ATN1	P54259	1190 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	CHMP4BP1	P59074	171 aa		13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	ADAM17	P78536	824 aa		13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	GRIN1	Q05586	938 aa		13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	TARBP2	Q15633	366 aa	Known RBP	13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	PTGIS	Q16647	500 aa		13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	ANO5	Q75V66	913 aa		13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	FAM126B	Q8IXS8	530 aa		13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	RETREG2	Q8NC44	543 aa		13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	RASSF8	Q8NHQ8	419 aa		13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	LMBR1	Q8WVP7	490 aa		13.6	□□□□□ -0.23
DDX55-210	ENST00000543016	SYMPK	Q92797	1274 aa	Known RBP	13.6	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms