RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 PRKCIP41743 596 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 ECE1P42892 770 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 MCCD1P59942 119 aaPredicted RBP10.85□□□□□ -0.67
SS18-205ENST00000542420 GPS2Q13227 327 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 MAP9Q49MG5 647 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 CIAPIN1Q6FI81 312 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 RRAGAQ7L523 313 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 SFR1Q86XK3 245 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 SLC9A9Q8IVB4 645 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 ACER1Q8TDN7 264 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 ATRIPQ8WXE1 791 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 MXRA8Q9BRK3 442 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 WDR18Q9BV38 432 aa10.85□□□□□ -0.67
SS18-205ENST00000542420 FAM207AQ9NSI2 230 aaPredicted RBP10.85□□□□□ -0.67
SS18-205ENST00000542420 DBR1Q9UK59 544 aaKnown RBP10.85□□□□□ -0.67
SS18-205ENST00000542420 CES2O00748 559 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 GAS7O60861 476 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 SLITRK3O94933 977 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 TBC1D8O95759 1140 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 RFX1P22670 979 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 EPS15P42566 896 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 EN1Q05925 392 aaPredicted RBP10.84□□□□□ -0.67
SS18-205ENST00000542420 PABPC4Q13310 644 aaKnown RBP eCLIP10.84□□□□□ -0.677e-6■■□□□ 12
SS18-205ENST00000542420 CCDC70Q6NSX1 233 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 LDHDQ86WU2 507 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 PRPF38AQ8NAV1 312 aaKnown RBP10.84□□□□□ -0.67
SS18-205ENST00000542420 LSM14BQ9BX40 385 aaKnown RBP10.84□□□□□ -0.67
SS18-205ENST00000542420 PARVGQ9HBI0 331 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 ZNF219Q9P2Y4 722 aaPredicted RBP10.84□□□□□ -0.67
SS18-205ENST00000542420 FEZ2Q9UHY8 353 aaPredicted RBP10.84□□□□□ -0.67
SS18-205ENST00000542420 PHIPQ8WWQ0 1821 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 SHTN1A0MZ66 631 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 ZNF263O14978 683 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 FAM13AO94988 1023 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 XRCC5P13010 732 aaKnown RBP10.84□□□□□ -0.67
SS18-205ENST00000542420 DPEP1P16444 411 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 MAGEA1P43355 309 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 USP14P54578 494 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 KCNH2Q12809 1159 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 PPP2R5AQ15172 486 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 SLC18A3Q16572 532 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 KIAA1755Q5JYT7 1200 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 HDXQ7Z353 690 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 C12orf56Q8IXR9 622 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 MMGT1Q8N4V1 131 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 GLIS3Q8NEA6 775 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 RDM1Q8NG50 284 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 CALR3Q96L12 384 aaKnown RBP10.84□□□□□ -0.67
SS18-205ENST00000542420 LACRTQ9GZZ8 138 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 BHMT2Q9H2M3 363 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 ACBD3Q9H3P7 528 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 VIPAS39Q9H9C1 493 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 PIM2Q9P1W9 311 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 CALCOCO1Q9P1Z2 691 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 INTUQ9ULD6 942 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 SNX12Q9UMY4 172 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 HYOU1Q9Y4L1 999 aa10.84□□□□□ -0.67
SS18-205ENST00000542420 ASTN1O14525 1302 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 RLFQ13129 1914 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 DICER1Q9UPY3 1922 aaKnown RBP10.83□□□□□ -0.68
SS18-205ENST00000542420 ARID2Q68CP9 1835 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 CLRN2A0PK11 232 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 PHF20L1A8MW92 1017 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 EML1O00423 815 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 EPHB6O15197 1021 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 MAPK13O15264 365 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 CTNND1O60716 968 aaKnown RBP10.83□□□□□ -0.68
SS18-205ENST00000542420 EIF3JO75822 258 aaKnown RBP10.83□□□□□ -0.68
SS18-205ENST00000542420 RAD17O75943 681 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 CFBP00751 764 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 NR3C1P04150 777 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 HOXA13P31271 388 aaPredicted RBP10.83□□□□□ -0.68
SS18-205ENST00000542420 PSMC6P62333 389 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 IFI16Q16666 785 aaKnown RBP10.83□□□□□ -0.68
SS18-205ENST00000542420 PCNX4Q63HM2 1172 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 NOX5Q96PH1 765 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 ZNF577Q9BSK1 485 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 FUT8Q9BYC5 575 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 ST6GALNAC4Q9H4F1 302 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 YY1AP1Q9H869 796 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 PCDHB13Q9Y5F0 798 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 ABL1P00519 1130 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 ATP1A1P05023 1023 aaKnown RBP10.83□□□□□ -0.68
SS18-205ENST00000542420 PSMC2P35998 433 aaKnown RBP10.83□□□□□ -0.68
SS18-205ENST00000542420 PLA2G4AP47712 749 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 ENPEPQ07075 957 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 SF3B2Q13435 895 aaKnown RBP10.83□□□□□ -0.68
SS18-205ENST00000542420 ASIC2Q16515 512 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 LONRF2Q1L5Z9 754 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 BEND6Q5SZJ8 279 aaPredicted RBP10.83□□□□□ -0.68
SS18-205ENST00000542420 DPY19L2P1Q6NXN4 242 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 GBP6Q6ZN66 633 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 GJA10Q969M2 543 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 BORCS6Q96GS4 357 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 STRA6Q9BX79 667 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 FGFBP2Q9BYJ0 223 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 MYOZ2Q9NPC6 264 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 ZNF277Q9NRM2 450 aaPredicted RBP10.83□□□□□ -0.68
SS18-205ENST00000542420 TBC1D22BQ9NU19 505 aa10.83□□□□□ -0.68
SS18-205ENST00000542420 PUF60Q9UHX1 559 aaKnown RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms