RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 FAM217BQ9NTX9 383 aaPredicted RBP9.49□□□□□ -0.89
CHD4-208ENST00000540960 CYP2D7A0A087X1C5 515 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 SPTLC2O15270 562 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 ZEB2O60315 1214 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 PRDM1O75626 825 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 GLP2RO95838 553 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 TTLL1O95922 423 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 CXCL10P02778 98 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 PARP1P09874 1014 aaKnown RBP9.48□□□□□ -0.89
CHD4-208ENST00000540960 SCG2P13521 617 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 RASA1P20936 1047 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 KRT2P35908 639 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 NOVP48745 357 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 PURAQ00577 322 aaKnown RBP9.48□□□□□ -0.89
CHD4-208ENST00000540960 CNTN2Q02246 1040 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 FAM160A1Q05DH4 1040 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 BFSP2Q13515 415 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 SLC39A14Q15043 492 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 GPATCH4Q5T3I0 446 aaKnown RBP9.48□□□□□ -0.89
CHD4-208ENST00000540960 MYOCDQ8IZQ8 938 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 DTWD2Q8NBA8 298 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 MRPS27Q92552 414 aaKnown RBP9.48□□□□□ -0.89
CHD4-208ENST00000540960 SAMD11Q96NU1 681 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.48□□□□□ -0.89
CHD4-208ENST00000540960 SPZ1Q9BXG8 430 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 TNMDQ9H2S6 317 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 CABP5Q9NP86 173 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 TFIP11Q9UBB9 837 aaKnown RBP9.48□□□□□ -0.89
CHD4-208ENST00000540960 SEC63Q9UGP8 760 aaKnown RBP9.48□□□□□ -0.89
CHD4-208ENST00000540960 STX8Q9UNK0 236 aa9.48□□□□□ -0.89
CHD4-208ENST00000540960 CUTAO60888 179 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 MYL3P08590 195 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 LINC00271P0C7V0 271 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 CYP2D6P10635 497 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 NPR3P17342 541 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 CMA1P23946 247 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 GNA11P29992 359 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 GABPAQ06546 454 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 ORC2Q13416 577 aaPredicted RBP9.47□□□□□ -0.89
CHD4-208ENST00000540960 IKBKEQ14164 716 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 PFKFB3Q16875 520 aaPredicted RBP9.47□□□□□ -0.89
CHD4-208ENST00000540960 PPM1JQ5JR12 505 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 KANK3Q6NY19 840 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 SASS6Q6UVJ0 657 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 DIS3L2Q8IYB7 885 aaKnown RBP9.47□□□□□ -0.89
CHD4-208ENST00000540960 ELOA2Q8IYF1 753 aaPredicted RBP9.47□□□□□ -0.89
CHD4-208ENST00000540960 ZNF579Q8NAF0 562 aaKnown RBP9.47□□□□□ -0.89
CHD4-208ENST00000540960 SUMF1Q8NBK3 374 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 LINC00301Q8NCQ3 95 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 FLCNQ8NFG4 579 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 RIN2Q8WYP3 895 aaPredicted RBP9.47□□□□□ -0.89
CHD4-208ENST00000540960 SUSD6Q92537 303 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 DHX38Q92620 1227 aaKnown RBP9.47□□□□□ -0.89
CHD4-208ENST00000540960 PHKBQ93100 1093 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 RRP36Q96EU6 259 aaKnown RBP9.47□□□□□ -0.89
CHD4-208ENST00000540960 TIGD1Q96MW7 591 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 NAT10Q9H0A0 1025 aaKnown RBP9.47□□□□□ -0.89
CHD4-208ENST00000540960 KANSL2Q9H9L4 492 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 FAM13BQ9NYF5 915 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 V9GY48 417 aaPredicted RBP9.47□□□□□ -0.89
CHD4-208ENST00000540960 CEP295Q9C0D2 2601 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 NAV1Q8NEY1 1877 aa9.47□□□□□ -0.89
CHD4-208ENST00000540960 NBEAQ8NFP9 2946 aa9.46□□□□□ -0.89
CHD4-208ENST00000540960 GADD45BO75293 160 aaPredicted RBP9.46□□□□□ -0.9
CHD4-208ENST00000540960 SELPP16109 830 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 PLCD1P51178 756 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 NLRP5P59047 1200 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 CCDC173Q0VFZ6 552 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 MBTPS1Q14703 1052 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 SNRNP48Q6IEG0 339 aaKnown RBP9.46□□□□□ -0.9
CHD4-208ENST00000540960 TAPT1Q6NXT6 567 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 PPP1R18Q6NYC8 613 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 TMEM179Q6ZVK1 233 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 LRRC8DQ7L1W4 858 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 EEPD1Q7L9B9 569 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 LURAP1LQ8IV03 231 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 STK11IPQ8N1F8 1099 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 FAM133AQ8N9E0 248 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 USP28Q96RU2 1077 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 NAP1L4Q99733 375 aaKnown RBP9.46□□□□□ -0.9
CHD4-208ENST00000540960 TMEM47Q9BQJ4 181 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 MYL10Q9BUA6 226 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 MFSD1Q9H3U5 465 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 CLSTN2Q9H4D0 955 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 SH2D4AQ9H788 454 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 GDPD2Q9HCC8 539 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 MTMR4Q9NYA4 1195 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 TMEM63CQ9P1W3 806 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 USP25Q9UHP3 1055 aa9.46□□□□□ -0.9
CHD4-208ENST00000540960 CDV3Q9UKY7 258 aaKnown RBP9.46□□□□□ -0.9
CHD4-208ENST00000540960 HELZ2Q9BYK8 2649 aaKnown RBP9.46□□□□□ -0.9
CHD4-208ENST00000540960 SYCE3A1L190 88 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 PALM3A6NDB9 673 aaPredicted RBP9.45□□□□□ -0.9
CHD4-208ENST00000540960 LAD1O00515 517 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 MPHOSPH10O00566 681 aaKnown RBP9.45□□□□□ -0.9
CHD4-208ENST00000540960 UPP2O95045 317 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 ATF7P17544 494 aaPredicted RBP9.45□□□□□ -0.9
CHD4-208ENST00000540960 RXRAP19793 462 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 AOC1P19801 751 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 DNAJB1P25685 340 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms