RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 REV3LO60673 3130 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 COL1A2P08123 1366 aa16.06■□□□□ 0.16
USP28-209ENST00000540925 ABHD14A-ACY1A0A1B0GW23 586 aa16.06■□□□□ 0.16
USP28-209ENST00000540925 FAM205CA6NFA0 338 aa16.06■□□□□ 0.16
USP28-209ENST00000540925 WDR64B1ANS9 1081 aa16.06■□□□□ 0.16
USP28-209ENST00000540925 HBP1O60381 514 aa16.06■□□□□ 0.16
USP28-209ENST00000540925 MMP1P03956 469 aa16.06■□□□□ 0.16
USP28-209ENST00000540925 CTSHP09668 335 aa16.06■□□□□ 0.16
USP28-209ENST00000540925 NR5A1Q13285 461 aa16.06■□□□□ 0.16
USP28-209ENST00000540925 TRAPPC12Q8WVT3 735 aa16.06■□□□□ 0.16
USP28-209ENST00000540925 ZSCAN31Q96LW9 406 aaPredicted RBP16.06■□□□□ 0.16
USP28-209ENST00000540925 FAM161BQ96MY7 647 aa16.06■□□□□ 0.16
USP28-209ENST00000540925 CDX2Q99626 313 aaPredicted RBP16.06■□□□□ 0.16
USP28-209ENST00000540925 UNC45AQ9H3U1 944 aa16.06■□□□□ 0.16
USP28-209ENST00000540925 ZNF576Q9H609 170 aa16.06■□□□□ 0.16
USP28-209ENST00000540925 TRPC6Q9Y210 931 aa16.06■□□□□ 0.16
USP28-209ENST00000540925 PCDHA2Q9Y5H9 948 aa16.06■□□□□ 0.16
USP28-209ENST00000540925 CCDC194A0A1B0GVG4 234 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 BACH1O14867 736 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 ZNF862O60290 1169 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 GAS7O60861 476 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 EFCAB14O75071 495 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 RPLP2P05387 115 aaKnown RBP16.05■□□□□ 0.16
USP28-209ENST00000540925 PSAPP07602 524 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 RABGGTBP53611 331 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 IGBP1P78318 339 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 DEFB103AP81534 67 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 RABEP1Q15276 862 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 LRCH2Q5VUJ6 765 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 PDXDC2PQ6P474 469 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 PIK3AP1Q6ZUJ8 805 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 NEK8Q86SG6 692 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 HERC6Q8IVU3 1022 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 CCDC83Q8IWF9 413 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 DBF4BQ8NFT6 615 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 RDM1Q8NG50 284 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 DNAJB3Q8WWF6 145 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 TNPO1Q92973 898 aaKnown RBP16.05■□□□□ 0.16
USP28-209ENST00000540925 SH2B1Q9NRF2 756 aaPredicted RBP16.05■□□□□ 0.16
USP28-209ENST00000540925 DISC1Q9NRI5 854 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 DDX25Q9UHL0 483 aaKnown RBP16.05■□□□□ 0.16
USP28-209ENST00000540925 MICAL3Q7RTP6 2002 aa16.05■□□□□ 0.16
USP28-209ENST00000540925 SMIM35A0A1B0GVV1 85 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 MYOGP15173 224 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 GCFC2P16383 781 aaKnown RBP16.04■□□□□ 0.16
USP28-209ENST00000540925 SFNP31947 248 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 KRT2P35908 639 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 GRIN2CQ14957 1233 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 LETM2Q2VYF4 491 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 ZNF484Q5JVG2 852 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 KRT40Q6A162 431 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 MTHFD1LQ6UB35 978 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 IL27Q8NEV9 243 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 BBXQ8WY36 941 aaPredicted RBP16.04■□□□□ 0.16
USP28-209ENST00000540925 HAS1Q92839 578 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 TBC1D32Q96NH3 1257 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 TEKT3Q9BXF9 490 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 COL25A1Q9BXS0 654 aaPredicted RBP16.04■□□□□ 0.16
USP28-209ENST00000540925 NKX2-4Q9H2Z4 354 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 GABBR1Q9UBS5 961 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 MSRAQ9UJ68 235 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 VAV3Q9UKW4 847 aa16.04■□□□□ 0.16
USP28-209ENST00000540925 MYH9P35579 1960 aaKnown RBP16.04■□□□□ 0.16
USP28-209ENST00000540925 KDM3AQ9Y4C1 1321 aa16.03■□□□□ 0.16
USP28-209ENST00000540925 BTBD18B2RXH4 712 aa16.03■□□□□ 0.16
USP28-209ENST00000540925 TBX3O15119 743 aa16.03■□□□□ 0.16
USP28-209ENST00000540925 STBD1O95210 358 aa16.03■□□□□ 0.16
USP28-209ENST00000540925 C22orf31O95567 290 aa16.03■□□□□ 0.16
USP28-209ENST00000540925 JAK3P52333 1124 aa16.03■□□□□ 0.16
USP28-209ENST00000540925 MRPS6P82932 125 aaKnown RBP16.03■□□□□ 0.16
USP28-209ENST00000540925 IKBKEQ14164 716 aa16.03■□□□□ 0.16
USP28-209ENST00000540925 LPIN1Q14693 890 aa16.03■□□□□ 0.16
USP28-209ENST00000540925 UGCGQ16739 394 aa16.03■□□□□ 0.16
USP28-209ENST00000540925 FBXO47Q5MNV8 452 aa16.03■□□□□ 0.16
USP28-209ENST00000540925 DIS3L2Q8IYB7 885 aaKnown RBP16.03■□□□□ 0.16
USP28-209ENST00000540925 LINC01465Q8N7H1 131 aa16.03■□□□□ 0.16
USP28-209ENST00000540925 FAM20AQ96MK3 541 aa16.03■□□□□ 0.16
USP28-209ENST00000540925 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.02■□□□□ 0.16
USP28-209ENST00000540925 WNT7AO00755 349 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 ARHGEF15O94989 841 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 GJB5O95377 273 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 CD2BP2O95400 341 aaKnown RBP16.02■□□□□ 0.16
USP28-209ENST00000540925 KLRC1P26715 233 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 KCNJ6P48051 423 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 SPIRE1Q08AE8 756 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 PPP2R5CQ13362 524 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.02■□□□□ 0.16
USP28-209ENST00000540925 RSPH3Q86UC2 560 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 KIAA0319LQ8IZA0 1049 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 SEPT8Q92599 483 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 APBB2Q92870 758 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 FAM167AQ96KS9 214 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 CEP89Q96ST8 783 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 NAP1L4Q99733 375 aaKnown RBP16.02■□□□□ 0.16
USP28-209ENST00000540925 CDY2AQ9Y6F7 541 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 SQORQ9Y6N5 450 aa16.02■□□□□ 0.16
USP28-209ENST00000540925 EML1O00423 815 aa16.01■□□□□ 0.15
USP28-209ENST00000540925 CHMP2AO43633 222 aa16.01■□□□□ 0.15
USP28-209ENST00000540925 CCNT1O60563 726 aaKnown RBP16.01■□□□□ 0.15
USP28-209ENST00000540925 OATP04181 439 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms