RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 MAGEF1Q9HAY2 307 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 KBTBD4Q9NVX7 518 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 USP25Q9UHP3 1055 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 DBR1Q9UK59 544 aaKnown RBP11.82□□□□□ -0.52
VPS33A-204ENST00000540669 SLFN14P0C7P3 912 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 RARBP10826 455 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 XRCC6P12956 609 aaKnown RBP eCLIP11.81□□□□□ -0.52
VPS33A-204ENST00000540669 CCT6AP40227 531 aaKnown RBP11.81□□□□□ -0.52
VPS33A-204ENST00000540669 MNX1P50219 401 aaPredicted RBP11.81□□□□□ -0.52
VPS33A-204ENST00000540669 CPT1AP50416 773 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 SLC12A3P55017 1021 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 PURAQ00577 322 aaKnown RBP11.81□□□□□ -0.52
VPS33A-204ENST00000540669 MDM2Q00987 491 aaPredicted RBP11.81□□□□□ -0.52
VPS33A-204ENST00000540669 PRKCEQ02156 737 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 CYP4A11Q02928 519 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 FSCN1Q16658 493 aaKnown RBP11.81□□□□□ -0.52
VPS33A-204ENST00000540669 CCDC73Q6ZRK6 1079 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 ANO5Q75V66 913 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 BANK1Q8NDB2 785 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 SPATA20Q8TB22 786 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 SPOCK2Q92563 424 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 ATP6V0A1Q93050 837 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 PYM1Q9BRP8 204 aaKnown RBP11.81□□□□□ -0.52
VPS33A-204ENST00000540669 UNC93B1Q9H1C4 597 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 MLXIPQ9HAP2 919 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 HMX1Q9NP08 348 aaPredicted RBP11.81□□□□□ -0.52
VPS33A-204ENST00000540669 OGDHLQ9ULD0 1010 aa11.81□□□□□ -0.52
VPS33A-204ENST00000540669 ZNF202O95125 648 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 EYA4O95677 639 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 OATP04181 439 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 TXLNAP40222 546 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 SYKP43405 635 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 RARRES1P49788 294 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 SOX10P56693 466 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 PSMC6P62333 389 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 ADAM17P78536 824 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 MTFR1Q15390 333 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 LONRF3Q496Y0 759 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 KRBA2Q6ZNG9 492 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 LINC01465Q8N7H1 131 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 ATP8B4Q8TF62 1192 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 LARP4BQ92615 738 aaKnown RBP11.8□□□□□ -0.52
VPS33A-204ENST00000540669 RAD54LQ92698 747 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 NIFKQ9BYG3 293 aaKnown RBP11.8□□□□□ -0.52
VPS33A-204ENST00000540669 RNF208Q9H0X6 261 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 TNMDQ9H2S6 317 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 XPNPEP3Q9NQH7 507 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 ZNF302Q9NR11 478 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 PDLIM7Q9NR12 457 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 ANKEF1Q9NU02 776 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 DDX19AQ9NUU7 478 aaKnown RBP11.8□□□□□ -0.52
VPS33A-204ENST00000540669 DACT1Q9NYF0 836 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 FAM13BQ9NYF5 915 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 GABBR1Q9UBS5 961 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 TCEAL9Q9UHQ7 104 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 PPME1Q9Y570 386 aa11.8□□□□□ -0.52
VPS33A-204ENST00000540669 COL1A2P08123 1366 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 MYH11P35749 1972 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 IGKV6-21A0A0C4DH24 114 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 FRMD3A2A2Y4 597 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 NOP56O00567 594 aaKnown RBP11.79□□□□□ -0.52
VPS33A-204ENST00000540669 POLR2DO15514 142 aaKnown RBP11.79□□□□□ -0.52
VPS33A-204ENST00000540669 DYNC1LI2O43237 492 aaPredicted RBP11.79□□□□□ -0.52
VPS33A-204ENST00000540669 MARCH6O60337 910 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 KPNA6O60684 536 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 DKC1O60832 514 aaKnown RBP eCLIP11.79□□□□□ -0.52
VPS33A-204ENST00000540669 MYCP01106 439 aaPredicted RBP11.79□□□□□ -0.52
VPS33A-204ENST00000540669 CCL5P13501 91 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 STAT5BP51692 787 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 EHHADHQ08426 723 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 MAPK7Q13164 816 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 CTTNQ14247 550 aaKnown RBP11.79□□□□□ -0.52
VPS33A-204ENST00000540669 PLCB4Q15147 1175 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 LRRC41Q15345 812 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 DGKDQ16760 1214 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 XKR3Q5GH77 459 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 SWSAP1Q6NVH7 229 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 SESTD1Q86VW0 696 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 SYT2Q8N9I0 419 aaPredicted RBP11.79□□□□□ -0.52
VPS33A-204ENST00000540669 IQUBQ8NA54 791 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 SLC43A3Q8NBI5 491 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 KCNN1Q92952 543 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 CALML4Q96GE6 196 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 FAM167AQ96KS9 214 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 NACC1Q96RE7 527 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 TSEN34Q9BSV6 310 aaKnown RBP11.79□□□□□ -0.52
VPS33A-204ENST00000540669 CLSTN2Q9H4D0 955 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 SMARCAD1Q9H4L7 1026 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 KIAA1024Q9UPX6 916 aa11.79□□□□□ -0.52
VPS33A-204ENST00000540669 MKI67P46013 3256 aaKnown RBP11.79□□□□□ -0.52
VPS33A-204ENST00000540669 TRIP12Q14669 1992 aaPredicted RBP11.79□□□□□ -0.52
VPS33A-204ENST00000540669 TANC1Q9C0D5 1861 aa11.78□□□□□ -0.52
VPS33A-204ENST00000540669 ALPK3Q96L96 1907 aa11.78□□□□□ -0.52
VPS33A-204ENST00000540669 E9PMD0 336 aa11.78□□□□□ -0.52
VPS33A-204ENST00000540669 ZBTB39O15060 712 aa11.78□□□□□ -0.52
VPS33A-204ENST00000540669 SORBS3O60504 671 aa11.78□□□□□ -0.52
VPS33A-204ENST00000540669 PGK1P00558 417 aa11.78□□□□□ -0.52
VPS33A-204ENST00000540669 MYL1P05976 194 aa11.78□□□□□ -0.52
VPS33A-204ENST00000540669 GJB1P08034 283 aa11.78□□□□□ -0.52
VPS33A-204ENST00000540669 ZNF286BP0CG31 522 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms