RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 IRGCQ6NXR0 463 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 SPATA4Q8NEY3 305 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 EXOC7Q9UPT5 735 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 RPRD2Q5VT52 1461 aaKnown RBP9.38□□□□□ -0.91
YBX3-208ENST00000540447 RASSF9O75901 435 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 SLC39A14Q15043 492 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 RAPH1Q70E73 1250 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 QKIQ96PU8 341 aaKnown RBP eCLIP9.38□□□□□ -0.91
YBX3-208ENST00000540447 THTPAQ9BU02 230 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 L2HGDHQ9H9P8 463 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 FIS1Q9Y3D6 152 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 PRR23D1E9PI22 279 aaPredicted RBP9.38□□□□□ -0.91
YBX3-208ENST00000540447 PRR23D2P0DMB1 279 aaPredicted RBP9.38□□□□□ -0.91
YBX3-208ENST00000540447 NPR1P16066 1061 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 LDHAL6AQ6ZMR3 332 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 RBBP8NLQ8NC74 664 aaPredicted RBP9.38□□□□□ -0.91
YBX3-208ENST00000540447 OR9Q1Q8NGQ5 310 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 POLR3EQ9NVU0 708 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 FBXO9Q9UK97 447 aaPredicted RBP9.38□□□□□ -0.91
YBX3-208ENST00000540447 V9GY48 417 aaPredicted RBP9.38□□□□□ -0.91
YBX3-208ENST00000540447 CCDC189A1A4V9 331 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 AP3B1O00203 1094 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 FMNL1O95466 1100 aaPredicted RBP9.38□□□□□ -0.91
YBX3-208ENST00000540447 HSPA4LO95757 839 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 GHRP10912 638 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 TAS2R42Q7RTR8 314 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 LRRC59Q96AG4 307 aaKnown RBP9.38□□□□□ -0.91
YBX3-208ENST00000540447 MMS19Q96T76 1030 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 NAP1L4Q99733 375 aaKnown RBP9.38□□□□□ -0.91
YBX3-208ENST00000540447 KLC2Q9H0B6 622 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 TRIM33Q9UPN9 1127 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 TDRD9Q8NDG6 1382 aaKnown RBP9.38□□□□□ -0.91
YBX3-208ENST00000540447 MAP3K19Q56UN5 1328 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 LZTS3O60299 673 aaPredicted RBP9.38□□□□□ -0.91
YBX3-208ENST00000540447 SERPING1P05155 500 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 SMYD4Q8IYR2 804 aaPredicted RBP9.38□□□□□ -0.91
YBX3-208ENST00000540447 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.38□□□□□ -0.91
YBX3-208ENST00000540447 PNMA2Q9UL42 364 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 DIS3Q9Y2L1 958 aaKnown RBP9.38□□□□□ -0.91
YBX3-208ENST00000540447 L3MBTL1Q9Y468 752 aa9.38□□□□□ -0.91
YBX3-208ENST00000540447 EXOC3O60645 756 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 AFPP02771 609 aaKnown RBP9.37□□□□□ -0.91
YBX3-208ENST00000540447 CYP7A1P22680 504 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 ESCO1Q5FWF5 840 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 DHX40Q8IX18 779 aaKnown RBP9.37□□□□□ -0.91
YBX3-208ENST00000540447 GALNT8Q9NY28 637 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 HNRNPRO43390 633 aaKnown RBP9.37□□□□□ -0.91
YBX3-208ENST00000540447 PLIN5Q00G26 463 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 CCDC149Q6ZUS6 474 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.37□□□□□ -0.91
YBX3-208ENST00000540447 PYROXD1Q8WU10 500 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 WWP1Q9H0M0 922 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 DTNAQ9Y4J8 743 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 EMILIN1Q9Y6C2 1016 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 PITPNM2Q9BZ72 1349 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 GOLGA8MH3BSY2 632 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 GRM8O00222 908 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 AKR1D1P51857 326 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 LRRC39Q96DD0 335 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 RWDD2AQ9UIY3 292 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 IPPQ9Y573 584 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 POLR3AO14802 1390 aaPredicted RBP9.37□□□□□ -0.91
YBX3-208ENST00000540447 H0YC42 278 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 IL10P22301 178 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 STK4Q13043 487 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 PCDHB13Q9Y5F0 798 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 PCDHGA3Q9Y5H0 932 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 ZNF18P17022 549 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 GCLCP48506 637 aaPredicted RBP9.37□□□□□ -0.91
YBX3-208ENST00000540447 HADHQ16836 314 aaKnown RBP9.37□□□□□ -0.91
YBX3-208ENST00000540447 TTBK2Q6IQ55 1244 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 TSHZ1Q6ZSZ6 1077 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 ACAD11Q709F0 780 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 LPCAT2Q7L5N7 544 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 MB21D1Q8N884 522 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 SAYSD1Q9NPB0 183 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 BLOC1S6Q9UL45 172 aa9.37□□□□□ -0.91
YBX3-208ENST00000540447 UBN2Q6ZU65 1347 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 SEMA3DO95025 777 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 GCNT3O95395 438 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 CPP00450 1065 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 LRPAP1P30533 357 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 FCHO2Q0JRZ9 810 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 P3H1Q32P28 736 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 MDH1BQ5I0G3 518 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 TMEM63BQ5T3F8 832 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 TCAIMQ8N3R3 496 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 EEF2KMTQ96G04 330 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 UBN1Q9NPG3 1134 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 EIF2S1P05198 315 aaKnown RBP9.36□□□□□ -0.91
YBX3-208ENST00000540447 TRIM49P0CI25 452 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 TRIM49CP0CI26 452 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 TARSP26639 723 aaKnown RBP9.36□□□□□ -0.91
YBX3-208ENST00000540447 IL12RB1P42701 662 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 TUBA1BP68363 451 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 OCRLQ01968 901 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 HAUS3Q68CZ6 603 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 THOC7Q6I9Y2 204 aaKnown RBP9.36□□□□□ -0.91
YBX3-208ENST00000540447 B3GNT6Q6ZMB0 384 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 FRA10AC1Q70Z53 315 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms