RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 RINT1Q6NUQ1 792 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 PPP1R18Q6NYC8 613 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 RBM46Q8TBY0 533 aaKnown RBP18.58■□□□□ 0.56
USP28-208ENST00000540438 ACP6Q9NPH0 428 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 VAV3Q9UKW4 847 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 NR3C1P04150 777 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 ALAS1P13196 640 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 RPA1P27694 616 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 GUCY2FP51841 1108 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 KNOP1Q1ED39 458 aaKnown RBP18.57■□□□□ 0.56
USP28-208ENST00000540438 NAA35Q5VZE5 725 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 ZNF571Q7Z3V5 609 aaPredicted RBP18.57■□□□□ 0.56
USP28-208ENST00000540438 WDR11Q9BZH6 1224 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.57■□□□□ 0.56
USP28-208ENST00000540438 SERPINA10Q9UK55 444 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 RAB21Q9UL25 225 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 SPDYE2BA6NHP3 402 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 MAP2K7O14733 419 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 SPDYE6P0CI01 402 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 KLHDC7AQ5VTJ3 777 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 SLFN12Q8IYM2 578 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 SPATA4Q8NEY3 305 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 ZNF341Q9BYN7 854 aa18.57■□□□□ 0.56
USP28-208ENST00000540438 MYCLP12524 364 aaPredicted RBP18.56■□□□□ 0.56
USP28-208ENST00000540438 SREBF1P36956 1147 aa18.56■□□□□ 0.56
USP28-208ENST00000540438 PDE4CQ08493 712 aa18.56■□□□□ 0.56
USP28-208ENST00000540438 ERMNQ8TAM6 284 aa18.56■□□□□ 0.56
USP28-208ENST00000540438 ZNF577Q9BSK1 485 aa18.56■□□□□ 0.56
USP28-208ENST00000540438 AP1M1Q9BXS5 423 aa18.56■□□□□ 0.56
USP28-208ENST00000540438 XRCC5P13010 732 aaKnown RBP18.56■□□□□ 0.56
USP28-208ENST00000540438 EIF2AK2P19525 551 aaKnown RBP18.56■□□□□ 0.56
USP28-208ENST00000540438 PSMD2Q13200 908 aa18.56■□□□□ 0.56
USP28-208ENST00000540438 ASIC2Q16515 512 aa18.56■□□□□ 0.56
USP28-208ENST00000540438 DLK2Q6UY11 383 aa18.56■□□□□ 0.56
USP28-208ENST00000540438 RAVER2Q9HCJ3 691 aaKnown RBP18.56■□□□□ 0.56
USP28-208ENST00000540438 GPRC5CQ9NQ84 441 aa18.56■□□□□ 0.56
USP28-208ENST00000540438 GCNT4Q9P109 453 aa18.56■□□□□ 0.56
USP28-208ENST00000540438 COL20A1Q9P218 1284 aa18.56■□□□□ 0.56
USP28-208ENST00000540438 TELO2Q9Y4R8 837 aa18.56■□□□□ 0.56
USP28-208ENST00000540438 CALCAP01258 141 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 DPEP1P16444 411 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 GGCXP38435 758 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 USP8P40818 1118 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 EXOC3L4Q17RC7 722 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 SYT2Q8N9I0 419 aaPredicted RBP18.55■□□□□ 0.56
USP28-208ENST00000540438 TRIM58Q8NG06 486 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 UNC45AQ9H3U1 944 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 GOLGA8IPA6NC78 632 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 GOLGA8JA6NMD2 632 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 UCHL3P15374 230 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 COPB2P35606 906 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 ODR4Q5SWX8 454 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 LDHDQ86WU2 507 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 KIFC3Q9BVG8 833 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 JRKLQ9Y4A0 524 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 ASTN1O14525 1302 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 COL11A2P13942 1736 aaPredicted RBP18.55■□□□□ 0.56
USP28-208ENST00000540438 IGLV3-22A0A075B6J6 115 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 A0A1W2PQJ5 194 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 GCOM1H8Y6P7 765 aaPredicted RBP18.55■□□□□ 0.56
USP28-208ENST00000540438 POLR2MP0CAP2 368 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 CYP2C19P33261 490 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 HSP90B2PQ58FF3 399 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 OTOP1Q7RTM1 612 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 C7orf43Q8WVR3 580 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 CRYGNQ8WXF5 182 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 HOOK2Q96ED9 719 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 SELENOOQ9BVL4 669 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 LRRC27Q9C0I9 530 aa18.55■□□□□ 0.56
USP28-208ENST00000540438 PON1P27169 355 aa18.54■□□□□ 0.56
USP28-208ENST00000540438 KCTD16Q68DU8 428 aa18.54■□□□□ 0.56
USP28-208ENST00000540438 CNKSR1Q969H4 720 aa18.54■□□□□ 0.56
USP28-208ENST00000540438 WNK4Q96J92 1243 aa18.54■□□□□ 0.56
USP28-208ENST00000540438 KRT12Q99456 494 aa18.54■□□□□ 0.56
USP28-208ENST00000540438 FAM204AQ9H8W3 233 aa18.54■□□□□ 0.56
USP28-208ENST00000540438 ARHGEF10LQ9HCE6 1279 aa18.54■□□□□ 0.56
USP28-208ENST00000540438 CEP72Q9P209 647 aa18.54■□□□□ 0.56
USP28-208ENST00000540438 TGFB1I1O43294 461 aa18.54■□□□□ 0.56
USP28-208ENST00000540438 CAPN2P17655 700 aa18.54■□□□□ 0.56
USP28-208ENST00000540438 ASTE1Q2TB18 679 aaPredicted RBP18.54■□□□□ 0.56
USP28-208ENST00000540438 SYCP3Q8IZU3 236 aa18.54■□□□□ 0.56
USP28-208ENST00000540438 U2AF1L4Q8WU68 220 aaKnown RBP18.54■□□□□ 0.56
USP28-208ENST00000540438 NOX5Q96PH1 765 aa18.54■□□□□ 0.56
USP28-208ENST00000540438 ALS2CR12Q96Q35 445 aa18.54■□□□□ 0.56
USP28-208ENST00000540438 ARFGEF1Q9Y6D6 1849 aa18.54■□□□□ 0.56
USP28-208ENST00000540438 KCNK3O14649 394 aa18.53■□□□□ 0.56
USP28-208ENST00000540438 ZBTB7AO95365 584 aa18.53■□□□□ 0.56
USP28-208ENST00000540438 DLG4P78352 724 aa18.53■□□□□ 0.56
USP28-208ENST00000540438 DDX42Q86XP3 938 aaKnown RBP eCLIP18.53■□□□□ 0.56
USP28-208ENST00000540438 CCPG1Q9ULG6 757 aa18.53■□□□□ 0.56
USP28-208ENST00000540438 AP3B2Q13367 1082 aa18.53■□□□□ 0.56
USP28-208ENST00000540438 SLC15A2Q16348 729 aa18.53■□□□□ 0.56
USP28-208ENST00000540438 CBWD6Q4V339 395 aa18.53■□□□□ 0.56
USP28-208ENST00000540438 CBWD3Q5JTY5 395 aa18.53■□□□□ 0.56
USP28-208ENST00000540438 CBWD5Q5RIA9 395 aa18.53■□□□□ 0.56
USP28-208ENST00000540438 ZNF746Q6NUN9 644 aaPredicted RBP18.53■□□□□ 0.56
USP28-208ENST00000540438 SAMD7Q7Z3H4 446 aa18.53■□□□□ 0.56
USP28-208ENST00000540438 PLSCR1O15162 318 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 RNF40O75150 1001 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 AFPP02771 609 aaKnown RBP18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms