RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 TMEM184AQ6ZMB5 413 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 VN1R2Q8NFZ6 395 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 TNPO1Q92973 898 aaKnown RBP13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 ZBTB10Q96DT7 871 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 RIPOR3Q96MK2 946 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 CELF4Q9BZC1 486 aaKnown RBP13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 S1PR5Q9H228 398 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 TLR9Q9NR96 1032 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 AAASQ9NRG9 546 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 PCDHA2Q9Y5H9 948 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 IGSF9BQ9UPX0 1349 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 ERICH2A1L162 156 aa13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 IFIT3O14879 490 aaKnown RBP13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 SRGAP2BP0DMP2 458 aa13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 ITGB5P18084 799 aa13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 SARSP49591 514 aaKnown RBP13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 ERVFC1P60507 584 aa13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 TMEM62Q0P6H9 643 aa13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 SPOUT1Q5T280 376 aaKnown RBP13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 PLEKHM2Q8IWE5 1019 aa13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 NME8Q8N427 588 aa13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 PIBF1Q8WXW3 757 aa13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 TMX1Q9H3N1 280 aa13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 SENP2Q9HC62 589 aa13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 RNF216Q9NWF9 866 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 PCDHB7Q9Y5E2 793 aa13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 SPTBN4Q9H254 2564 aa13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 PTPRZ1P23471 2315 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 KDM3AQ9Y4C1 1321 aa13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 PLXNA4Q9HCM2 1894 aa13.36□□□□□ -0.27
CLSTN3-209ENST00000539982 FSCN2O14926 492 aa13.35□□□□□ -0.27
CLSTN3-209ENST00000539982 MAFGO15525 162 aa13.35□□□□□ -0.27
CLSTN3-209ENST00000539982 GALR2O43603 387 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-209ENST00000539982 FGF18O76093 207 aa13.35□□□□□ -0.27
CLSTN3-209ENST00000539982 PDGFBP01127 241 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-209ENST00000539982 KCNC3Q14003 757 aa13.35□□□□□ -0.27
CLSTN3-209ENST00000539982 WTAPQ15007 396 aa13.35□□□□□ -0.27
CLSTN3-209ENST00000539982 ANKRD54Q6NXT1 300 aa13.35□□□□□ -0.27
CLSTN3-209ENST00000539982 ZBTB33Q86T24 672 aa13.35□□□□□ -0.27
CLSTN3-209ENST00000539982 PCYT2Q99447 389 aa13.35□□□□□ -0.27
CLSTN3-209ENST00000539982 TMEM260Q9NX78 707 aa13.35□□□□□ -0.27
CLSTN3-209ENST00000539982 UBIAD1Q9Y5Z9 338 aa13.35□□□□□ -0.27
CLSTN3-209ENST00000539982 SMIM35A0A1B0GVV1 85 aa13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 SMARCA1P28370 1054 aa13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 TECP42680 631 aa13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 KRT76Q01546 638 aa13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 NFX1Q12986 1120 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 MTMR1Q13613 665 aa13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 SYCE2Q6PIF2 218 aa13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 CATIPQ7Z7H3 387 aa13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 THNSL1Q8IYQ7 743 aa13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 RASGRP4Q8TDF6 673 aa13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 RRP36Q96EU6 259 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 AZI2Q9H6S1 392 aa13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 RGS18Q9NS28 235 aa13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 TYW1Q9NV66 732 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 PKD2L1Q9P0L9 805 aa13.34□□□□□ -0.27
CLSTN3-209ENST00000539982 TBKBP1A7MCY6 615 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 HOXB8P17481 243 aaPredicted RBP13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 IBSPP21815 317 aaPredicted RBP13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 NBL1P41271 181 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 SART3Q15020 963 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 PLCB4Q15147 1175 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 TMEM266Q2M3C6 531 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 FAM102BQ5T8I3 360 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 B4GALNT3Q6L9W6 998 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 SLC24A5Q71RS6 500 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 ASCL5Q7RTU5 278 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 PLPPR4Q7Z2D5 763 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 CHD1LQ86WJ1 897 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 SMC5Q8IY18 1101 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 UBALD2Q8IYN6 164 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 COLGALT1Q8NBJ5 622 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 KREMEN2Q8NCW0 462 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 MAP3K14Q99558 947 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 SPZ1Q9BXG8 430 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 PSTPIP2Q9H939 334 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 JADE2Q9NQC1 790 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 C1orf112Q9NSG2 853 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 PUF60Q9UHX1 559 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 TRPC6Q9Y210 931 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 LZTS1Q9Y250 596 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 NR2E1Q9Y466 385 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 PLXNA3P51805 1871 aa13.33□□□□□ -0.28
CLSTN3-209ENST00000539982 MGEA5O60502 916 aa13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 CYP21A2P08686 494 aa13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 STAT5BP51692 787 aa13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 PLCB3Q01970 1234 aa13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 ODR4Q5SWX8 454 aa13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 MTHFD1LQ6UB35 978 aa13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 TRAPPC12Q8WVT3 735 aa13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 MRPS27Q92552 414 aaKnown RBP13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 ADAM2Q99965 735 aa13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 APOL5Q9BWW9 433 aa13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 CWH43Q9H720 699 aa13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 ERVK-5Q9HDB9 667 aa13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 JPH1Q9HDC5 661 aaPredicted RBP13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 SLC9A2Q9UBY0 812 aa13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 SEC63Q9UGP8 760 aaKnown RBP13.32□□□□□ -0.28
CLSTN3-209ENST00000539982 NOC2LQ9Y3T9 749 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms