RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 GRAMD1CQ8IYS0 662 aa13.38□□□□□ -0.27
CLIP1-208ENST00000537004 KAT2BQ92831 832 aa13.38□□□□□ -0.27
CLIP1-208ENST00000537004 SPATA33Q96N06 139 aa13.38□□□□□ -0.27
CLIP1-208ENST00000537004 ZNF830Q96NB3 372 aaPredicted RBP13.38□□□□□ -0.27
CLIP1-208ENST00000537004 MROH7Q68CQ1 1323 aa13.38□□□□□ -0.27
CLIP1-208ENST00000537004 SPDYE3A6NKU9 549 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 SLFN14P0C7P3 912 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 CYP2C9P11712 490 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 ITGB5P18084 799 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 CYP2C18P33260 490 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 NONOQ15233 471 aaKnown RBP eCLIP13.37□□□□□ -0.27
CLIP1-208ENST00000537004 SHHQ15465 462 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 DRC7Q8IY82 874 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 REXO1Q8N1G1 1221 aaKnown RBP13.37□□□□□ -0.27
CLIP1-208ENST00000537004 SMARCE1Q969G3 411 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 CCDC34Q96HJ3 373 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 RIC8AQ9NPQ8 531 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 IKBKBO14920 756 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 ZNF500O60304 480 aaPredicted RBP13.37□□□□□ -0.27
CLIP1-208ENST00000537004 ATP9AO75110 1047 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 TIMP1P01033 207 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 TPM3P06753 285 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 CDC25BP30305 580 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 SARSP49591 514 aaKnown RBP13.37□□□□□ -0.27
CLIP1-208ENST00000537004 ADCY7P51828 1080 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 SP4Q02446 784 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 LAMC2Q13753 1193 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 CYFIP1Q7L576 1253 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 PPTC7Q8NI37 304 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 CYP2W1Q8TAV3 490 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 EMID1Q96A84 441 aaPredicted RBP13.37□□□□□ -0.27
CLIP1-208ENST00000537004 MRFAP1L1Q96HT8 127 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 TTC12Q9H892 705 aaPredicted RBP13.37□□□□□ -0.27
CLIP1-208ENST00000537004 MLXIPQ9HAP2 919 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 PKD2L1Q9P0L9 805 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 CHD9Q3L8U1 2897 aa13.37□□□□□ -0.27
CLIP1-208ENST00000537004 CHD7Q9P2D1 2997 aa13.36□□□□□ -0.27
CLIP1-208ENST00000537004 A0A1W2PPC1 479 aa13.36□□□□□ -0.27
CLIP1-208ENST00000537004 SMTNL1A8MU46 457 aa13.36□□□□□ -0.27
CLIP1-208ENST00000537004 SPATA31C2B4DYI2 1134 aa13.36□□□□□ -0.27
CLIP1-208ENST00000537004 TGFB3P10600 412 aa13.36□□□□□ -0.27
CLIP1-208ENST00000537004 BMP6P22004 513 aa13.36□□□□□ -0.27
CLIP1-208ENST00000537004 LONP1P36776 959 aaKnown RBP13.36□□□□□ -0.27
CLIP1-208ENST00000537004 NCAPHQ15003 741 aa13.36□□□□□ -0.27
CLIP1-208ENST00000537004 DGKDQ16760 1214 aa13.36□□□□□ -0.27
CLIP1-208ENST00000537004 GNPTABQ3T906 1256 aa13.36□□□□□ -0.27
CLIP1-208ENST00000537004 MAN1B1Q9UKM7 699 aa13.36□□□□□ -0.27
CLIP1-208ENST00000537004 LAD1O00515 517 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 TLR3O15455 904 aaKnown RBP13.35□□□□□ -0.27
CLIP1-208ENST00000537004 CSF2RAP15509 400 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 CCL23P55773 120 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 TPM4P67936 248 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 JAKMIP3Q5VZ66 844 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 PPP1R18Q6NYC8 613 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 KCNV1Q6PIU1 500 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 NEK8Q86SG6 692 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 SPATA20Q8TB22 786 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 PAGE5Q96GU1 130 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 TMEM60Q9H2L4 133 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 HIPK3Q9H422 1215 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 KIAA1217Q5T5P2 1943 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 SMC2O95347 1197 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 ICAM3P32942 547 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 AFMP43652 599 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 MORC3Q14149 939 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 E2F4Q16254 413 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 LETM2Q2VYF4 491 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 MFSD5Q6N075 450 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 DTHD1Q6ZMT9 781 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 C16orf59Q7L2K0 433 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 TRIML1Q8N9V2 468 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 IQUBQ8NA54 791 aa13.35□□□□□ -0.27
CLIP1-208ENST00000537004 PYM1Q9BRP8 204 aaKnown RBP13.35□□□□□ -0.27
CLIP1-208ENST00000537004 CCNT1O60563 726 aaKnown RBP13.34□□□□□ -0.27
CLIP1-208ENST00000537004 KPNA6O60684 536 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 STAM2O75886 525 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 ACRP10323 421 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 TXLNAP40222 546 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 PRPHP41219 470 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 CLK2P49760 499 aaKnown RBP13.34□□□□□ -0.27
CLIP1-208ENST00000537004 MYL5Q02045 173 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 FPGSQ05932 587 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 TRIM50Q86XT4 487 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 TBCKQ8TEA7 893 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 UIMC1Q96RL1 719 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 CTAGE1Q96RT6 745 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 NOC4LQ9BVI4 516 aaKnown RBP13.34□□□□□ -0.27
CLIP1-208ENST00000537004 ANO3Q9BYT9 981 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 WNT8AQ9H1J5 351 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 UBIAD1Q9Y5Z9 338 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 LTBP2Q14767 1821 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 UNC80Q8N2C7 3258 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 SCN10AQ9Y5Y9 1956 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 PPFIA4O75335 1185 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 F2P00734 622 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 HSP90AA2PQ14568 343 aaPredicted RBP13.34□□□□□ -0.27
CLIP1-208ENST00000537004 KIAA0753Q2KHM9 967 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 LRIT3Q3SXY7 679 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 GDF6Q6KF10 455 aaPredicted RBP13.34□□□□□ -0.27
CLIP1-208ENST00000537004 XRRA1Q6P2D8 792 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms