RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 DCAF4Q8WV16 495 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 PIK3R5Q8WYR1 880 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 MKL1Q969V6 931 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 SPAG5Q96R06 1193 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 ZC3H12CQ9C0D7 883 aaKnown RBP21.1■□□□□ 0.97
VPS28-213ENST00000530983 DNM3Q9UQ16 869 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 CES2O00748 559 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 RAD51CO43502 376 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 CCT5P48643 541 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 EXOC3L4Q17RC7 722 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 SLFN13Q68D06 897 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 TTC19Q6DKK2 380 aaPredicted RBP21.09■□□□□ 0.97
VPS28-213ENST00000530983 TEKT1Q969V4 418 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 ANKRD31Q8N7Z5 1873 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 AKAP3O75969 853 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 CLSTN1O94985 981 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 GUCY2FP51841 1108 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 Q4G0T1 1027 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 CFAP58Q5T655 872 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 DNAAF5Q86Y56 855 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 SH2D3CQ8N5H7 860 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 LRRC57Q8N9N7 239 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 BCAS4Q8TDM0 211 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 GOLPH3Q9H4A6 298 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 NAGPAQ9UK23 515 aa21.09■□□□□ 0.97
VPS28-213ENST00000530983 FAM86B1E9PN63 330 aa21.08■□□□□ 0.97
VPS28-213ENST00000530983 PDXKO00764 312 aa21.08■□□□□ 0.97
VPS28-213ENST00000530983 TBX3O15119 743 aa21.08■□□□□ 0.97
VPS28-213ENST00000530983 FAM86B2P0C5J1 330 aa21.08■□□□□ 0.97
VPS28-213ENST00000530983 XRCC5P13010 732 aaKnown RBP21.08■□□□□ 0.97
VPS28-213ENST00000530983 RPS6KA1Q15418 735 aa21.08■□□□□ 0.97
VPS28-213ENST00000530983 ERMNQ8TAM6 284 aa21.08■□□□□ 0.97
VPS28-213ENST00000530983 YY1AP1Q9H869 796 aa21.08■□□□□ 0.97
VPS28-213ENST00000530983 BZW2Q9Y6E2 419 aaKnown RBP21.08■□□□□ 0.97
VPS28-213ENST00000530983 ASTN1O14525 1302 aa21.08■□□□□ 0.96
VPS28-213ENST00000530983 RSPH10B2B2RC85 870 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 KCNK3O14649 394 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 KIF4AO95239 1232 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 RSPH10BP0C881 870 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 SNAP25P60880 206 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 SF3B2Q13435 895 aaKnown RBP21.07■□□□□ 0.96
VPS28-213ENST00000530983 EPHA7Q15375 998 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 KCTD16Q68DU8 428 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 SIAH1Q8IUQ4 282 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 TAF4BQ92750 862 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 RABEP2Q9H5N1 569 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 BCAS3Q9H6U6 928 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 NYAP2Q9P242 653 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 AJAP1Q9UKB5 411 aaPredicted RBP21.07■□□□□ 0.96
VPS28-213ENST00000530983 ONECUT3O60422 494 aaPredicted RBP21.07■□□□□ 0.96
VPS28-213ENST00000530983 PRKCIP41743 596 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 TNNC1P63316 161 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 DCAF17Q5H9S7 520 aaPredicted RBP21.07■□□□□ 0.96
VPS28-213ENST00000530983 KLHL7Q8IXQ5 586 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 SIX2Q9NPC8 291 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 NENFQ9UMX5 172 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 NRXN2Q9P2S2 1712 aa21.07■□□□□ 0.96
VPS28-213ENST00000530983 CALUO43852 315 aaPredicted RBP21.06■□□□□ 0.96
VPS28-213ENST00000530983 ZBTB48P10074 688 aaPredicted RBP21.06■□□□□ 0.96
VPS28-213ENST00000530983 CACNB3P54284 484 aa21.06■□□□□ 0.96
VPS28-213ENST00000530983 BMT2Q1RMZ1 405 aa21.06■□□□□ 0.96
VPS28-213ENST00000530983 ALKBH5Q6P6C2 394 aaKnown RBP21.06■□□□□ 0.96
VPS28-213ENST00000530983 EFCAB13Q8IY85 973 aa21.06■□□□□ 0.96
VPS28-213ENST00000530983 WHAMMQ8TF30 809 aa21.06■□□□□ 0.96
VPS28-213ENST00000530983 NR3C1P04150 777 aa21.06■□□□□ 0.96
VPS28-213ENST00000530983 GUCY2CP25092 1073 aa21.06■□□□□ 0.96
VPS28-213ENST00000530983 CASP4P49662 377 aa21.06■□□□□ 0.96
VPS28-213ENST00000530983 CERKLQ49MI3 558 aaPredicted RBP21.06■□□□□ 0.96
VPS28-213ENST00000530983 CD302Q8IX05 232 aa21.06■□□□□ 0.96
VPS28-213ENST00000530983 SLC35C1Q96A29 364 aa21.06■□□□□ 0.96
VPS28-213ENST00000530983 AMNQ9BXJ7 453 aa21.06■□□□□ 0.96
VPS28-213ENST00000530983 TYW1Q9NV66 732 aaKnown RBP21.06■□□□□ 0.96
VPS28-213ENST00000530983 DDTLA6NHG4 134 aaPredicted RBP21.05■□□□□ 0.96
VPS28-213ENST00000530983 CPP00450 1065 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 SREBF1P36956 1147 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 CRKP46108 304 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 JAM2P57087 298 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 CYP4A11Q02928 519 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 TCP10Q12799 353 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 PDCLQ13371 301 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 SCFD2Q8WU76 684 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 RUSC1Q9BVN2 902 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 POLD4Q9HCU8 107 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 VAV3Q9UKW4 847 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 PCDHAC2Q9Y5I4 1007 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 ERVK-9P63128 1117 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 KCNA1Q09470 495 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 USH1GQ495M9 461 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 SLC27A3Q5K4L6 730 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 FAM20AQ96MK3 541 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 BHMT2Q9H2M3 363 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 FBXL5Q9UKA1 691 aa21.05■□□□□ 0.96
VPS28-213ENST00000530983 EBAG9O00559 213 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 MSH4O15457 936 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 TAL1P17542 331 aaPredicted RBP21.04■□□□□ 0.96
VPS28-213ENST00000530983 ECHS1P30084 290 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 PTPROQ16827 1216 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 TCERG1LQ5VWI1 586 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 ACTRT1Q8TDG2 376 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 PBKQ96KB5 322 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms