RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PDGFCQ9NRA1 345 aa23.36■■□□□ 1.33
VPS28-208ENST00000527797 ANKEF1Q9NU02 776 aa23.36■■□□□ 1.33
VPS28-208ENST00000527797 RWDD2AQ9UIY3 292 aa23.36■■□□□ 1.33
VPS28-208ENST00000527797 KIAA1217Q5T5P2 1943 aa23.35■■□□□ 1.33
VPS28-208ENST00000527797 SYNRGQ9UMZ2 1314 aa23.35■■□□□ 1.33
VPS28-208ENST00000527797 PSMA7O14818 248 aa23.35■■□□□ 1.33
VPS28-208ENST00000527797 TBCAO75347 108 aaKnown RBP23.35■■□□□ 1.33
VPS28-208ENST00000527797 SNAI1O95863 264 aaPredicted RBP23.35■■□□□ 1.33
VPS28-208ENST00000527797 STX17P56962 302 aa23.35■■□□□ 1.33
VPS28-208ENST00000527797 CCDC173Q0VFZ6 552 aa23.35■■□□□ 1.33
VPS28-208ENST00000527797 PADI6Q6TGC4 694 aa23.35■■□□□ 1.33
VPS28-208ENST00000527797 OTUD6AQ7L8S5 288 aa23.35■■□□□ 1.33
VPS28-208ENST00000527797 CCDC60Q8IWA6 550 aaPredicted RBP23.35■■□□□ 1.33
VPS28-208ENST00000527797 DHX37Q8IY37 1157 aaKnown RBP23.35■■□□□ 1.33
VPS28-208ENST00000527797 NELFBQ8WX92 580 aa23.35■■□□□ 1.33
VPS28-208ENST00000527797 SEPT1Q8WYJ6 367 aa23.35■■□□□ 1.33
VPS28-208ENST00000527797 HPS3Q969F9 1004 aa23.35■■□□□ 1.33
VPS28-208ENST00000527797 DHTKD1Q96HY7 919 aaPredicted RBP23.35■■□□□ 1.33
VPS28-208ENST00000527797 ZHX3Q9H4I2 956 aa23.35■■□□□ 1.33
VPS28-208ENST00000527797 TNPO2O14787 897 aaKnown RBP23.34■■□□□ 1.33
VPS28-208ENST00000527797 RARRES1P49788 294 aa23.34■■□□□ 1.33
VPS28-208ENST00000527797 FAM26FQ5R3K3 315 aa23.34■■□□□ 1.33
VPS28-208ENST00000527797 SPATA1Q5VX52 437 aa23.34■■□□□ 1.33
VPS28-208ENST00000527797 TAPT1Q6NXT6 567 aa23.34■■□□□ 1.33
VPS28-208ENST00000527797 KIAA0895Q8NCT3 520 aa23.34■■□□□ 1.33
VPS28-208ENST00000527797 MED15Q96RN5 788 aa23.34■■□□□ 1.33
VPS28-208ENST00000527797 ZNF302Q9NR11 478 aa23.34■■□□□ 1.33
VPS28-208ENST00000527797 NFE2L3Q9Y4A8 694 aa23.34■■□□□ 1.33
VPS28-208ENST00000527797 COL4A3BPQ9Y5P4 624 aa23.34■■□□□ 1.33
VPS28-208ENST00000527797 GSTTP1A0A1W2PQM5 241 aa23.33■■□□□ 1.33
VPS28-208ENST00000527797 RBM47A0AV96 593 aaKnown RBP23.33■■□□□ 1.33
VPS28-208ENST00000527797 AP5Z1O43299 807 aa23.33■■□□□ 1.33
VPS28-208ENST00000527797 ADCY5O95622 1261 aa23.33■■□□□ 1.33
VPS28-208ENST00000527797 HOXC6P09630 235 aa23.33■■□□□ 1.33
VPS28-208ENST00000527797 SOCS4Q8WXH5 440 aa23.33■■□□□ 1.33
VPS28-208ENST00000527797 FANCLQ9NW38 375 aa23.33■■□□□ 1.33
VPS28-208ENST00000527797 ZNF236Q9UL36 1845 aa23.33■■□□□ 1.33
VPS28-208ENST00000527797 IGKV6D-21A0A0A0MT36 114 aa23.33■■□□□ 1.32
VPS28-208ENST00000527797 GAP43P17677 238 aa23.33■■□□□ 1.32
VPS28-208ENST00000527797 GUCY2CP25092 1073 aa23.33■■□□□ 1.32
VPS28-208ENST00000527797 RGS2P41220 211 aa23.33■■□□□ 1.32
VPS28-208ENST00000527797 XKR9Q5GH70 373 aa23.33■■□□□ 1.32
VPS28-208ENST00000527797 UTP14CQ5TAP6 766 aaKnown RBP23.33■■□□□ 1.32
VPS28-208ENST00000527797 SARM1Q6SZW1 724 aa23.33■■□□□ 1.32
VPS28-208ENST00000527797 USP6NLQ92738 828 aa23.33■■□□□ 1.32
VPS28-208ENST00000527797 KATNBL1Q9H079 304 aa23.33■■□□□ 1.32
VPS28-208ENST00000527797 ABHD16BQ9H3Z7 469 aa23.33■■□□□ 1.32
VPS28-208ENST00000527797 ODF2LQ9ULJ1 636 aa23.33■■□□□ 1.32
VPS28-208ENST00000527797 MAFBQ9Y5Q3 323 aaPredicted RBP23.33■■□□□ 1.32
VPS28-208ENST00000527797 IGSF9BQ9UPX0 1349 aa23.32■■□□□ 1.32
VPS28-208ENST00000527797 NOP56O00567 594 aaKnown RBP23.32■■□□□ 1.32
VPS28-208ENST00000527797 ZNF862O60290 1169 aa23.32■■□□□ 1.32
VPS28-208ENST00000527797 FAM13AO94988 1023 aa23.32■■□□□ 1.32
VPS28-208ENST00000527797 FAM160B1Q5W0V3 765 aa23.32■■□□□ 1.32
VPS28-208ENST00000527797 TRMT1LQ7Z2T5 733 aaKnown RBP23.32■■□□□ 1.32
VPS28-208ENST00000527797 GUF1Q8N442 669 aaKnown RBP23.32■■□□□ 1.32
VPS28-208ENST00000527797 TRIM5Q9C035 493 aa23.32■■□□□ 1.32
VPS28-208ENST00000527797 HSD3B7Q9H2F3 369 aa23.32■■□□□ 1.32
VPS28-208ENST00000527797 STBD1O95210 358 aa23.31■■□□□ 1.32
VPS28-208ENST00000527797 FCGRTP55899 365 aa23.31■■□□□ 1.32
VPS28-208ENST00000527797 PRKCEQ02156 737 aa23.31■■□□□ 1.32
VPS28-208ENST00000527797 TPD52L1Q16890 204 aaPredicted RBP23.31■■□□□ 1.32
VPS28-208ENST00000527797 XKR3Q5GH77 459 aa23.31■■□□□ 1.32
VPS28-208ENST00000527797 ANO5Q75V66 913 aa23.31■■□□□ 1.32
VPS28-208ENST00000527797 SFR1Q86XK3 245 aa23.31■■□□□ 1.32
VPS28-208ENST00000527797 COPS5Q92905 334 aa23.31■■□□□ 1.32
VPS28-208ENST00000527797 SPATA33Q96N06 139 aa23.31■■□□□ 1.32
VPS28-208ENST00000527797 PPP1R9BQ96SB3 815 aa23.31■■□□□ 1.32
VPS28-208ENST00000527797 GPR20Q99678 358 aa23.31■■□□□ 1.32
VPS28-208ENST00000527797 TBC1D7Q9P0N9 293 aa23.31■■□□□ 1.32
VPS28-208ENST00000527797 PCDHA2Q9Y5H9 948 aa23.31■■□□□ 1.32
VPS28-208ENST00000527797 BICDL2A1A5D9 508 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 RSPH10B2B2RC85 870 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 RSPH10BP0C881 870 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 CCNE1P24864 410 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 TCF7P36402 384 aaPredicted RBP23.3■■□□□ 1.32
VPS28-208ENST00000527797 ACVR2BQ13705 512 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 PLA2G4FQ68DD2 849 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 P2RX5Q93086 422 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 TIPINQ9BVW5 301 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 AZI2Q9H6S1 392 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 GJD2Q9UKL4 321 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 PLXNA1Q9UIW2 1896 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 TMEM150BA6NC51 233 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 KIF20AO95235 890 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 GH1P01241 217 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 CYP2B6P20813 491 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 STAT5BP51692 787 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 NPEPPSP55786 919 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 LAMC2Q13753 1193 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 MYOCDQ8IZQ8 938 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 MYCT1Q8N699 235 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 AFAP1L1Q8TED9 768 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 PDLIM2Q96JY6 352 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 CEP170P1Q96L14 293 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 APBA2Q99767 749 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 PARVGQ9HBI0 331 aa23.3■■□□□ 1.32
VPS28-208ENST00000527797 ZHX1Q9UKY1 873 aaPredicted RBP23.3■■□□□ 1.32
VPS28-208ENST00000527797 USO1O60763 962 aaKnown RBP23.29■■□□□ 1.32
VPS28-208ENST00000527797 HIP1RO75146 1068 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms