RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 KLRG1Q96E93 195 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 PARVGQ9HBI0 331 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 PICK1Q9NRD5 415 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 ARHGAP20Q9P2F6 1191 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 UBE4BO95155 1302 aa17.55■□□□□ 0.4
USH1C-204ENST00000526313 TGFB1I1O43294 461 aa17.55■□□□□ 0.4
USH1C-204ENST00000526313 FAM13AO94988 1023 aa17.55■□□□□ 0.4
USH1C-204ENST00000526313 P4HBP07237 508 aaKnown RBP17.55■□□□□ 0.4
USH1C-204ENST00000526313 NOL9Q5SY16 702 aaKnown RBP17.55■□□□□ 0.4
USH1C-204ENST00000526313 PDXDC1Q6P996 788 aa17.55■□□□□ 0.4
USH1C-204ENST00000526313 ATG4CQ96DT6 458 aa17.55■□□□□ 0.4
USH1C-204ENST00000526313 TBC1D22BQ9NU19 505 aa17.55■□□□□ 0.4
USH1C-204ENST00000526313 CEP72Q9P209 647 aa17.55■□□□□ 0.4
USH1C-204ENST00000526313 CDC23Q9UJX2 597 aa17.55■□□□□ 0.4
USH1C-204ENST00000526313 SFI1A8K8P3 1242 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 SLC16A3O15427 465 aaKnown RBP17.54■□□□□ 0.4
USH1C-204ENST00000526313 GCNT3O95395 438 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 RPL13P26373 211 aaKnown RBP17.54■□□□□ 0.4
USH1C-204ENST00000526313 DSG3P32926 999 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 HIRAP54198 1017 aaPredicted RBP17.54■□□□□ 0.4
USH1C-204ENST00000526313 DPY19L2P1Q6NXN4 242 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 XRRA1Q6P2D8 792 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 RNF207Q6ZRF8 634 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 ZNF720Q7Z2F6 126 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 MIER3Q7Z3K6 550 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 MNS1Q8NEH6 495 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 WNK4Q96J92 1243 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 PDCD2LQ9BRP1 358 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 STRA6Q9BX79 667 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 NUCKS1Q9H1E3 243 aaKnown RBP17.54■□□□□ 0.4
USH1C-204ENST00000526313 ZSWIM4Q9H7M6 989 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 PXMP2Q9NR77 195 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 SSC5DA1L4H1 1573 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 CTAGE9A4FU28 777 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 LRRC53A6NM62 1247 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 ZNF263O14978 683 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 ATP2A1O14983 1001 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 NR3C1P04150 777 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 ERCC3P19447 782 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 ASTE1Q2TB18 679 aaPredicted RBP17.54■□□□□ 0.4
USH1C-204ENST00000526313 PRAMEF18Q5VWM3 479 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 RSRC2Q7L4I2 434 aaKnown RBP17.54■□□□□ 0.4
USH1C-204ENST00000526313 MYCT1Q8N699 235 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 BANK1Q8NDB2 785 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 BORCS6Q96GS4 357 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 PURBQ96QR8 312 aaKnown RBP17.54■□□□□ 0.4
USH1C-204ENST00000526313 MAF1Q9H063 256 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 POLD4Q9HCU8 107 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 HOMER2Q9NSB8 354 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 ARMCX3Q9UH62 379 aaPredicted RBP17.54■□□□□ 0.4
USH1C-204ENST00000526313 DBR1Q9UK59 544 aaKnown RBP17.54■□□□□ 0.4
USH1C-204ENST00000526313 RIPK3Q9Y572 518 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 ZHX2Q9Y6X8 837 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 ZMYM2Q9UBW7 1377 aa17.54■□□□□ 0.4
USH1C-204ENST00000526313 H2AFXP16104 143 aaPredicted RBP17.53■□□□□ 0.4
USH1C-204ENST00000526313 KCNA1Q09470 495 aa17.53■□□□□ 0.4
USH1C-204ENST00000526313 KCNH2Q12809 1159 aa17.53■□□□□ 0.4
USH1C-204ENST00000526313 MAPK7Q13164 816 aa17.53■□□□□ 0.4
USH1C-204ENST00000526313 MAPK8IP2Q13387 824 aaPredicted RBP17.53■□□□□ 0.4
USH1C-204ENST00000526313 MTMR1Q13613 665 aa17.53■□□□□ 0.4
USH1C-204ENST00000526313 RRAGAQ7L523 313 aa17.53■□□□□ 0.4
USH1C-204ENST00000526313 UBE2Q2Q8WVN8 375 aa17.53■□□□□ 0.4
USH1C-204ENST00000526313 CCDC42Q96M95 316 aa17.53■□□□□ 0.4
USH1C-204ENST00000526313 RMDN3Q96TC7 470 aa17.53■□□□□ 0.4
USH1C-204ENST00000526313 NAPGQ99747 312 aaPredicted RBP17.53■□□□□ 0.4
USH1C-204ENST00000526313 METTL14Q9HCE5 456 aaKnown RBP17.53■□□□□ 0.4
USH1C-204ENST00000526313 CTDP1Q9Y5B0 961 aaPredicted RBP17.53■□□□□ 0.4
USH1C-204ENST00000526313 RCCD1A6NED2 376 aa17.53■□□□□ 0.4
USH1C-204ENST00000526313 AKAP3O75969 853 aa17.53■□□□□ 0.4
USH1C-204ENST00000526313 PLEKP08567 350 aaPredicted RBP17.53■□□□□ 0.4
USH1C-204ENST00000526313 NMT1P30419 496 aaKnown RBP17.53■□□□□ 0.4
USH1C-204ENST00000526313 HGSNATQ68CP4 663 aa17.53■□□□□ 0.4
USH1C-204ENST00000526313 DAW1Q8N136 415 aa17.53■□□□□ 0.4
USH1C-204ENST00000526313 UBXN4Q92575 508 aa17.53■□□□□ 0.4
USH1C-204ENST00000526313 TRIM10Q9UDY6 481 aa17.53■□□□□ 0.4
USH1C-204ENST00000526313 ZNF214Q9UL59 606 aaPredicted RBP17.53■□□□□ 0.4
USH1C-204ENST00000526313 SSU72P8A0A1W2PR75 194 aa17.52■□□□□ 0.4
USH1C-204ENST00000526313 PPP1R37O75864 691 aa17.52■□□□□ 0.4
USH1C-204ENST00000526313 EIF2AK2P19525 551 aaKnown RBP17.52■□□□□ 0.4
USH1C-204ENST00000526313 LMNB1P20700 586 aa17.52■□□□□ 0.4
USH1C-204ENST00000526313 VAV2P52735 878 aa17.52■□□□□ 0.4
USH1C-204ENST00000526313 AMPD2Q01433 879 aa17.52■□□□□ 0.4
USH1C-204ENST00000526313 COG2Q14746 738 aa17.52■□□□□ 0.4
USH1C-204ENST00000526313 CCDC94Q9BW85 323 aaPredicted RBP17.52■□□□□ 0.4
USH1C-204ENST00000526313 LACRTQ9GZZ8 138 aa17.52■□□□□ 0.4
USH1C-204ENST00000526313 GANQ9H2C0 597 aa17.52■□□□□ 0.4
USH1C-204ENST00000526313 PLCB1Q9NQ66 1216 aa17.52■□□□□ 0.4
USH1C-204ENST00000526313 RNF146Q9NTX7 359 aa17.52■□□□□ 0.4
USH1C-204ENST00000526313 GGA3Q9NZ52 723 aa17.52■□□□□ 0.4
USH1C-204ENST00000526313 ARHGEF35A5YM69 484 aa17.51■□□□□ 0.39
USH1C-204ENST00000526313 DDX39AO00148 427 aaKnown RBP17.51■□□□□ 0.39
USH1C-204ENST00000526313 KRT86O43790 486 aa17.51■□□□□ 0.39
USH1C-204ENST00000526313 EIF4A3P38919 411 aaKnown RBP17.51■□□□□ 0.39
USH1C-204ENST00000526313 HMGCS2P54868 508 aa17.51■□□□□ 0.39
USH1C-204ENST00000526313 CCDC122Q5T0U0 273 aa17.51■□□□□ 0.39
USH1C-204ENST00000526313 FBXO38Q6PIJ6 1188 aa17.51■□□□□ 0.39
USH1C-204ENST00000526313 CATSPERGQ6ZRH7 1159 aa17.51■□□□□ 0.39
USH1C-204ENST00000526313 VSIG10LQ86VR7 867 aa17.51■□□□□ 0.39
USH1C-204ENST00000526313 JAKMIP2Q96AA8 810 aa17.51■□□□□ 0.39
USH1C-204ENST00000526313 LSM14BQ9BX40 385 aaKnown RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms