RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 TMEM132BQ14DG7 1078 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 ABCB5Q2M3G0 1257 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 CATSPEREQ5SY80 951 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 MILR1Q7Z6M3 343 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 NME9Q86XW9 330 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 RBM12BQ8IXT5 1001 aaKnown RBP6.1□□□□□ -1.43
CD44-220ENST00000525688 C1orf162Q8NEQ5 155 aaPredicted RBP6.1□□□□□ -1.43
CD44-220ENST00000525688 FLAD1Q8NFF5 587 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 ABHD4Q8TB40 342 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 LMBR1Q8WVP7 490 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 RTFDC1Q9BY42 306 aaPredicted RBP6.1□□□□□ -1.43
CD44-220ENST00000525688 TERF2IPQ9NYB0 399 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 HSPBP1Q9NZL4 362 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 SIT1Q9Y3P8 196 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 ZC3H12DA2A288 527 aaKnown RBP6.09□□□□□ -1.43
CD44-220ENST00000525688 F8W031 263 aaPredicted RBP6.09□□□□□ -1.43
CD44-220ENST00000525688 EIF3JO75822 258 aaKnown RBP6.09□□□□□ -1.43
CD44-220ENST00000525688 SCGB1D2O95969 90 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 MYBL2P10244 700 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 AFMP43652 599 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 MOGSQ13724 837 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 LRRC41Q15345 812 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 NXNQ6DKJ4 435 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 CHPFQ8IZ52 775 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 ARRDC4Q8NCT1 418 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 TSPAN17Q96FV3 270 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 FAXDC2Q96IV6 333 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 PCGF6Q9BYE7 350 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 RNF32Q9H0A6 362 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 PCMTD2Q9NV79 361 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 RIC8BQ9NVN3 520 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 LAS1LQ9Y4W2 734 aaKnown RBP6.09□□□□□ -1.43
CD44-220ENST00000525688 ABCC8Q09428 1581 aa6.09□□□□□ -1.43
CD44-220ENST00000525688 TOPBP1Q92547 1522 aa6.09□□□□□ -1.44
CD44-220ENST00000525688 RASSF10A6NK89 507 aa6.08□□□□□ -1.44
CD44-220ENST00000525688 FOXP2O15409 715 aa6.08□□□□□ -1.44
CD44-220ENST00000525688 MPOP05164 745 aa6.08□□□□□ -1.44
CD44-220ENST00000525688 FAHP16930 419 aa6.08□□□□□ -1.44
CD44-220ENST00000525688 GPR3P46089 330 aa6.08□□□□□ -1.44
CD44-220ENST00000525688 PDCD1Q15116 288 aa6.08□□□□□ -1.44
CD44-220ENST00000525688 PAN2Q504Q3 1202 aaKnown RBP6.08□□□□□ -1.44
CD44-220ENST00000525688 TMEM240Q5SV17 173 aa6.08□□□□□ -1.44
CD44-220ENST00000525688 SIRT2Q8IXJ6 389 aa6.08□□□□□ -1.44
CD44-220ENST00000525688 TCEAL8Q8IYN2 117 aa6.08□□□□□ -1.44
CD44-220ENST00000525688 ZNF496Q96IT1 587 aaPredicted RBP6.08□□□□□ -1.44
CD44-220ENST00000525688 ACAP3Q96P50 834 aa6.08□□□□□ -1.44
CD44-220ENST00000525688 RHOBTB2Q9BYZ6 727 aa6.08□□□□□ -1.44
CD44-220ENST00000525688 ZNF180Q9UJW8 692 aa6.08□□□□□ -1.44
CD44-220ENST00000525688 ASB1Q9Y576 335 aa6.08□□□□□ -1.44
CD44-220ENST00000525688 DNMBPQ6XZF7 1577 aa6.08□□□□□ -1.44
CD44-220ENST00000525688 GOLGA8AA7E2F4 631 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 GOLGA8BA8MQT2 603 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 KIF3BO15066 747 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 KDM1AO60341 852 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 MT-CO1P00395 513 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 PTMSP20962 102 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 RECQLP46063 649 aaPredicted RBP6.07□□□□□ -1.44
CD44-220ENST00000525688 MAPKAPK2P49137 400 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 GALK1P51570 392 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 SCAND1P57086 179 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 TMEM62Q0P6H9 643 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 PCBP2Q15366 365 aaKnown RBP eCLIP6.07□□□□□ -1.44
CD44-220ENST00000525688 RPTNQ6XPR3 784 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 RTN4RL1Q86UN2 441 aaPredicted RBP6.07□□□□□ -1.44
CD44-220ENST00000525688 MIB1Q86YT6 1006 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 CMIPQ8IY22 773 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 MYO1HQ8N1T3 1032 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 PMM1Q92871 262 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 FOXRED1Q96CU9 486 aaPredicted RBP6.07□□□□□ -1.44
CD44-220ENST00000525688 MS4A5Q9H3V2 200 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 RXFP1Q9HBX9 757 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 LUC7LQ9NQ29 371 aaKnown RBP6.07□□□□□ -1.44
CD44-220ENST00000525688 MSRAQ9UJ68 235 aa6.07□□□□□ -1.44
CD44-220ENST00000525688 PRAMEF25A6NGN4 478 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 GOLGA6L22H0YM25 854 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 CREB3O43889 395 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 SNUPNO95149 360 aaKnown RBP6.06□□□□□ -1.44
CD44-220ENST00000525688 ZSCAN20P17040 1043 aaPredicted RBP6.06□□□□□ -1.44
CD44-220ENST00000525688 CCND1P24385 295 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 LRP8Q14114 963 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 FSCN1Q16658 493 aaKnown RBP6.06□□□□□ -1.44
CD44-220ENST00000525688 FAM102BQ5T8I3 360 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 PGM2L1Q6PCE3 622 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 TMTC2Q8N394 836 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 NME8Q8N427 588 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 CPA6Q8N4T0 437 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 ASB15Q8WXK1 588 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 RTF1Q92541 710 aaKnown RBP6.06□□□□□ -1.44
CD44-220ENST00000525688 E2F7Q96AV8 911 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 INTS4Q96HW7 963 aaKnown RBP6.06□□□□□ -1.44
CD44-220ENST00000525688 PKNOX2Q96KN3 472 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 GBP4Q96PP9 640 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 WNT8AQ9H1J5 351 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 BTBD7Q9P203 1132 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 KCNG1Q9UIX4 513 aa6.06□□□□□ -1.44
CD44-220ENST00000525688 DBR1Q9UK59 544 aaKnown RBP6.06□□□□□ -1.44
CD44-220ENST00000525688 LUC7L2Q9Y383 392 aaKnown RBP6.06□□□□□ -1.44
CD44-220ENST00000525688 IFT140Q96RY7 1462 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.05□□□□□ -1.44
CD44-220ENST00000525688 LCHNA4D1U4 455 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms