RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 A0A1B0GTL3 188 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 GOLGA6L22H0YM25 854 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 TGM5O43548 720 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 FKBP9O95302 570 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 CYP17A1P05093 508 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 PTX3P26022 381 aaPredicted RBP6.18□□□□□ -1.42
CD44-215ENST00000525241 RPL13P26373 211 aaKnown RBP6.18□□□□□ -1.42
CD44-215ENST00000525241 CANXP27824 592 aaKnown RBP6.18□□□□□ -1.42
CD44-215ENST00000525241 GLRBP48167 497 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 MLLT6P55198 1093 aaPredicted RBP6.18□□□□□ -1.42
CD44-215ENST00000525241 SART3Q15020 963 aaKnown RBP6.18□□□□□ -1.42
CD44-215ENST00000525241 TCERG1LQ5VWI1 586 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 FKBP9P1Q75LS8 142 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 RTN4RL1Q86UN2 441 aaPredicted RBP6.18□□□□□ -1.42
CD44-215ENST00000525241 KRTAP19-1Q8IUB9 90 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 EFHBQ8N7U6 833 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 C16orf92Q96LL3 132 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 AMNQ9BXJ7 453 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 FAM126AQ9BYI3 521 aaPredicted RBP6.18□□□□□ -1.42
CD44-215ENST00000525241 SPTLC3Q9NUV7 552 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 UCKL1Q9NWZ5 548 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 ARHGAP20Q9P2F6 1191 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 ZFP69BQ9UJL9 534 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 CROTQ9UKG9 612 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 ASB1Q9Y576 335 aa6.18□□□□□ -1.42
CD44-215ENST00000525241 PRAMEF22A3QJZ6 481 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 NEMP1O14524 444 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 EYA4O95677 639 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 COL6A1P12109 1028 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 ZNF28P17035 718 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 LSSP48449 732 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 KPNA1P52294 538 aaPredicted RBP6.17□□□□□ -1.42
CD44-215ENST00000525241 IL2P60568 153 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 STRN3Q13033 797 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 CT47A1Q5JQC4 288 aaPredicted RBP6.17□□□□□ -1.42
CD44-215ENST00000525241 PRAMEF18Q5VWM3 479 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 ESRP1Q6NXG1 681 aaKnown RBP6.17□□□□□ -1.42
CD44-215ENST00000525241 TTLL7Q6ZT98 887 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 USP7Q93009 1102 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 WRNIP1Q96S55 665 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 KRTAP4-12Q9BQ66 201 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 KRTAP9-2Q9BYQ4 174 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 INCENPQ9NQS7 918 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 KCND1Q9NSA2 647 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 GALNT8Q9NY28 637 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 NTMQ9P121 344 aa6.17□□□□□ -1.42
CD44-215ENST00000525241 CNGA1P29973 690 aa6.16□□□□□ -1.42
CD44-215ENST00000525241 IL13P35225 146 aa6.16□□□□□ -1.42
CD44-215ENST00000525241 ID4P47928 161 aa6.16□□□□□ -1.42
CD44-215ENST00000525241 SARSP49591 514 aaKnown RBP6.16□□□□□ -1.42
CD44-215ENST00000525241 SMAD3P84022 425 aaKnown RBP6.16□□□□□ -1.42
CD44-215ENST00000525241 OCRLQ01968 901 aa6.16□□□□□ -1.42
CD44-215ENST00000525241 EPHA7Q15375 998 aa6.16□□□□□ -1.42
CD44-215ENST00000525241 SMAD2Q15796 467 aaKnown RBP6.16□□□□□ -1.42
CD44-215ENST00000525241 LRSAM1Q6UWE0 723 aa6.16□□□□□ -1.42
CD44-215ENST00000525241 CARFQ8N187 725 aa6.16□□□□□ -1.42
CD44-215ENST00000525241 STPG3Q8N7X2 389 aa6.16□□□□□ -1.42
CD44-215ENST00000525241 HIPK4Q8NE63 616 aa6.16□□□□□ -1.42
CD44-215ENST00000525241 ZSCAN18Q8TBC5 510 aaPredicted RBP6.16□□□□□ -1.42
CD44-215ENST00000525241 ZCCHC14Q8WYQ9 949 aaKnown RBP6.16□□□□□ -1.42
CD44-215ENST00000525241 ERCC4Q92889 916 aaPredicted RBP6.16□□□□□ -1.42
CD44-215ENST00000525241 TACO1Q9BSH4 297 aaKnown RBP6.16□□□□□ -1.42
CD44-215ENST00000525241 IFT22Q9H7X7 185 aa6.16□□□□□ -1.42
CD44-215ENST00000525241 ZMAT4Q9H898 229 aa6.16□□□□□ -1.42
CD44-215ENST00000525241 EMC7Q9NPA0 242 aa6.16□□□□□ -1.42
CD44-215ENST00000525241 TOMM22Q9NS69 142 aa6.16□□□□□ -1.42
CD44-215ENST00000525241 DDX3XO00571 662 aaKnown RBP eCLIP6.15□□□□□ -1.42
CD44-215ENST00000525241 ZEB2O60315 1214 aa6.15□□□□□ -1.42
CD44-215ENST00000525241 CYP7B1O75881 506 aa6.15□□□□□ -1.42
CD44-215ENST00000525241 KNG1P01042 644 aa6.15□□□□□ -1.42
CD44-215ENST00000525241 NFKB2Q00653 900 aa6.15□□□□□ -1.42
CD44-215ENST00000525241 LCNL1Q6ZST4 164 aa6.15□□□□□ -1.42
CD44-215ENST00000525241 TTC1Q99614 292 aa6.15□□□□□ -1.42
CD44-215ENST00000525241 FBXO21O94952 628 aa6.14□□□□□ -1.43
CD44-215ENST00000525241 CHGBP05060 677 aa6.14□□□□□ -1.43
CD44-215ENST00000525241 ZSCAN22P10073 491 aaPredicted RBP6.14□□□□□ -1.43
CD44-215ENST00000525241 ECE1P42892 770 aa6.14□□□□□ -1.43
CD44-215ENST00000525241 SLURP1P55000 103 aa6.14□□□□□ -1.43
CD44-215ENST00000525241 IL13RA1P78552 427 aa6.14□□□□□ -1.43
CD44-215ENST00000525241 AMPD3Q01432 767 aa6.14□□□□□ -1.43
CD44-215ENST00000525241 ALDH6A1Q02252 535 aaKnown RBP6.14□□□□□ -1.43
CD44-215ENST00000525241 LRRC32Q14392 662 aa6.14□□□□□ -1.43
CD44-215ENST00000525241 STILQ15468 1287 aa6.14□□□□□ -1.43
CD44-215ENST00000525241 PASD1Q8IV76 773 aa6.14□□□□□ -1.43
CD44-215ENST00000525241 SCYL1Q96KG9 808 aa6.14□□□□□ -1.43
CD44-215ENST00000525241 FOXB1Q99853 325 aa6.14□□□□□ -1.43
CD44-215ENST00000525241 BTBD2Q9BX70 525 aa6.14□□□□□ -1.43
CD44-215ENST00000525241 ANKRD62A6NC57 917 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.13□□□□□ -1.43
CD44-215ENST00000525241 BRINP1O60477 761 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 TRIM13O60858 407 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 PRLP01236 227 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 PHC1P78364 1004 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 JAG1P78504 1218 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 STAT4Q14765 748 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 TERF2Q15554 542 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 ATP13A4Q4VNC1 1196 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 GPR158Q5T848 1215 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 KANK2Q63ZY3 851 aa6.13□□□□□ -1.43
CD44-215ENST00000525241 TRMT10BQ6PF06 316 aaKnown RBP6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms