RNA–Protein interactions for RNA: ENST00000524141.5

SPIDR-225, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 2,761 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-225	ENST00000524141	TTI1	O43156	1089 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	CTNND1	O60716	968 aa	Known RBP	11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	TRIM37	O94972	964 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	SSB	P05455	408 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	FLT3	P36888	993 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	ITIH4	Q14624	930 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	CRYM	Q14894	314 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	SPRED3	Q2MJR0	410 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	USP17L2	Q6R6M4	530 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	C3orf67	Q6ZVT6	689 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	FRMD5	Q7Z6J6	570 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	SLC44A5	Q8NCS7	719 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	NEDD1	Q8NHV4	660 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	WDR66	Q8TBY9	1149 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	MIEF2	Q96C03	454 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	EYA3	Q99504	573 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	NUDT12	Q9BQG2	462 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	RIOX1	Q9H6W3	641 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	EMILIN3	Q9NT22	766 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	BTG4	Q9NY30	223 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	TFCP2L1	Q9NZI6	479 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	HDAC9	Q9UKV0	1011 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	XIRP1	Q702N8	1843 aa	Known RBP	11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	CCT8L1P	A6NM43	557 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	PHF20L1	A8MW92	1017 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	ASAP2	O43150	1006 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	GFPT2	O94808	682 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	NUDT17	P0C025	328 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	PPP4C	P60510	307 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	RPS8	P62241	208 aa	Known RBP	11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	EXOC3L4	Q17RC7	722 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	PPP1R18	Q6NYC8	613 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	DAAM2	Q86T65	1068 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	FAM228A	Q86W67	206 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	NELFCD	Q8IXH7	590 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	VAT1L	Q9HCJ6	419 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	ARMCX3	Q9UH62	379 aa	Predicted RBP	11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	STXBP5L	Q9Y2K9	1186 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	PCDHA2	Q9Y5H9	948 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	SNED1	Q8TER0	1413 aa		11.18	□□□□□ -0.62
SPIDR-225	ENST00000524141	LOC102724428	A0A0B4J2F2	783 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	GOLGA6L10	A0A0M3HER8	536 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	MARCH6	O60337	910 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	AFP	P02771	609 aa	Known RBP	11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	NR2F2	P24468	414 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	SIK1	P57059	783 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	HERC4	Q5GLZ8	1057 aa	Predicted RBP	11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	CRELD2	Q6UXH1	353 aa	Predicted RBP	11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	SCFD1	Q8WVM8	642 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	PGM2	Q96G03	612 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	HES6	Q96HZ4	224 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	NAP1L4	Q99733	375 aa	Known RBP	11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	GOLPH3	Q9H4A6	298 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	AMFR	Q9UKV5	643 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	CFAP73	A6NFT4	308 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	CCDC169	A6NNP5	214 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	DCDC2C	A8MYV0	355 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	PPIP5K2	O43314	1243 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	LDHC	P07864	332 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	PTEN	P60484	403 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	C16orf86	Q6ZW13	317 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	NT5DC3	Q86UY8	548 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	TGFBRAP1	Q8WUH2	860 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	TXLNGY	Q9BZA5	131 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	DDX25	Q9UHL0	483 aa	Known RBP	11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	NENF	Q9UMX5	172 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	PCDHA12	Q9UN75	941 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	ATP8A1	Q9Y2Q0	1164 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	PITPNM2	Q9BZ72	1349 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141	ROBO1	Q9Y6N7	1651 aa		11.17	□□□□□ -0.62
SPIDR-225	ENST00000524141		F8W031	263 aa	Predicted RBP	11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	CLGN	O14967	610 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	MME	P08473	750 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	XRCC5	P13010	732 aa	Known RBP	11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	ITGA4	P13612	1032 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	ELF3	P78545	371 aa	Predicted RBP	11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	RIPK1	Q13546	671 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	TEX11	Q8IYF3	940 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	NEK9	Q8TD19	979 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	CCHCR1	Q8TD31	782 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	ZNF317	Q96PQ6	595 aa	Predicted RBP	11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	MXD3	Q9BW11	206 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	NSRP1	Q9H0G5	558 aa	Known RBP	11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	STMN4	Q9H169	189 aa	Predicted RBP	11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	KANSL2	Q9H9L4	492 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	TBC1D7	Q9P0N9	293 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	SAMD15	Q9P1V8	674 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	SLC12A4	Q9UP95	1085 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	ATP6V1G2	O95670	118 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	PLA2G4B	P0C869	781 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	PON1	P27169	355 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	GBP1	P32455	592 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	MMP13	P45452	471 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	TNNI2	P48788	182 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	CDK8	P49336	464 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	POU5F1	Q01860	360 aa	Known RBP	11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	PPP1R7	Q15435	360 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	ECM1	Q16610	540 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	ASPRV1	Q53RT3	343 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms