RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 MAFBQ9Y5Q3 323 aaPredicted RBP18.4■□□□□ 0.54
LSM1-205ENST00000523511 SQORQ9Y6N5 450 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 MYH7BA7E2Y1 1941 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 COL1A2P08123 1366 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 SMIM35A0A1B0GVV1 85 aa18.39■□□□□ 0.53
LSM1-205ENST00000523511 ST18O60284 1047 aa18.39■□□□□ 0.53
LSM1-205ENST00000523511 BAG4O95429 457 aaKnown RBP18.39■□□□□ 0.53
LSM1-205ENST00000523511 CTDNEP1O95476 244 aa18.39■□□□□ 0.53
LSM1-205ENST00000523511 RABGGTBP53611 331 aa18.39■□□□□ 0.53
LSM1-205ENST00000523511 INF2Q27J81 1249 aa18.39■□□□□ 0.53
LSM1-205ENST00000523511 ODR4Q5SWX8 454 aa18.39■□□□□ 0.53
LSM1-205ENST00000523511 MARCH8Q5T0T0 291 aa18.39■□□□□ 0.53
LSM1-205ENST00000523511 MTHFD1LQ6UB35 978 aa18.39■□□□□ 0.53
LSM1-205ENST00000523511 ZNF710Q8N1W2 664 aa18.39■□□□□ 0.53
LSM1-205ENST00000523511 LENG9Q96B70 501 aa18.39■□□□□ 0.53
LSM1-205ENST00000523511 FAM20AQ96MK3 541 aa18.39■□□□□ 0.53
LSM1-205ENST00000523511 IFIH1Q9BYX4 1025 aaKnown RBP18.39■□□□□ 0.53
LSM1-205ENST00000523511 LAMA3Q16787 3333 aa18.38■□□□□ 0.53
LSM1-205ENST00000523511 MAGEB2O15479 319 aa18.38■□□□□ 0.53
LSM1-205ENST00000523511 CCNT1O60563 726 aaKnown RBP18.38■□□□□ 0.53
LSM1-205ENST00000523511 DKC1O60832 514 aaKnown RBP eCLIP18.38■□□□□ 0.53
LSM1-205ENST00000523511 KLRC1P26715 233 aa18.38■□□□□ 0.53
LSM1-205ENST00000523511 TMOD1P28289 359 aa18.38■□□□□ 0.53
LSM1-205ENST00000523511 RBM25P49756 843 aaKnown RBP18.38■□□□□ 0.53
LSM1-205ENST00000523511 HMGN5P82970 282 aaKnown RBP18.38■□□□□ 0.53
LSM1-205ENST00000523511 GRIN2CQ14957 1233 aa18.38■□□□□ 0.53
LSM1-205ENST00000523511 PIK3AP1Q6ZUJ8 805 aa18.38■□□□□ 0.53
LSM1-205ENST00000523511 CCDC60Q8IWA6 550 aaPredicted RBP18.38■□□□□ 0.53
LSM1-205ENST00000523511 SLC17A8Q8NDX2 589 aa18.38■□□□□ 0.53
LSM1-205ENST00000523511 NSUN7Q8NE18 718 aaKnown RBP18.38■□□□□ 0.53
LSM1-205ENST00000523511 MYLIPQ8WY64 445 aa18.38■□□□□ 0.53
LSM1-205ENST00000523511 UIMC1Q96RL1 719 aa18.38■□□□□ 0.53
LSM1-205ENST00000523511 RAD9AQ99638 391 aa18.38■□□□□ 0.53
LSM1-205ENST00000523511 FAM49AQ9H0Q0 323 aaPredicted RBP18.38■□□□□ 0.53
LSM1-205ENST00000523511 TBX3O15119 743 aa18.37■□□□□ 0.53
LSM1-205ENST00000523511 MRPS6P82932 125 aaKnown RBP18.37■□□□□ 0.53
LSM1-205ENST00000523511 MBTPS1Q14703 1052 aa18.37■□□□□ 0.53
LSM1-205ENST00000523511 RABEP1Q15276 862 aa18.37■□□□□ 0.53
LSM1-205ENST00000523511 NPY5RQ15761 445 aa18.37■□□□□ 0.53
LSM1-205ENST00000523511 RUFY4Q6ZNE9 571 aa18.37■□□□□ 0.53
LSM1-205ENST00000523511 MIER3Q7Z3K6 550 aa18.37■□□□□ 0.53
LSM1-205ENST00000523511 FAM184AQ8NB25 1140 aa18.37■□□□□ 0.53
LSM1-205ENST00000523511 MBOAT7Q96N66 472 aa18.37■□□□□ 0.53
LSM1-205ENST00000523511 RNF216Q9NWF9 866 aaPredicted RBP18.37■□□□□ 0.53
LSM1-205ENST00000523511 INSL6Q9Y581 213 aa18.37■□□□□ 0.53
LSM1-205ENST00000523511 CHMP2AO43633 222 aa18.36■□□□□ 0.53
LSM1-205ENST00000523511 GJB5O95377 273 aa18.36■□□□□ 0.53
LSM1-205ENST00000523511 TDP2O95551 362 aa18.36■□□□□ 0.53
LSM1-205ENST00000523511 CHRNA1P02708 482 aa18.36■□□□□ 0.53
LSM1-205ENST00000523511 FDPSP14324 419 aaKnown RBP18.36■□□□□ 0.53
LSM1-205ENST00000523511 TSHZ1Q6ZSZ6 1077 aa18.36■□□□□ 0.53
LSM1-205ENST00000523511 SLFN12Q8IYM2 578 aa18.36■□□□□ 0.53
LSM1-205ENST00000523511 FTHL17Q9BXU8 183 aa18.36■□□□□ 0.53
LSM1-205ENST00000523511 YBX2Q9Y2T7 364 aaKnown RBP18.36■□□□□ 0.53
LSM1-205ENST00000523511 KIF3AQ9Y496 699 aa18.36■□□□□ 0.53
LSM1-205ENST00000523511 TRPV2Q9Y5S1 764 aa18.36■□□□□ 0.53
LSM1-205ENST00000523511 CDY2AQ9Y6F7 541 aa18.36■□□□□ 0.53
LSM1-205ENST00000523511 PSMD10O75832 226 aa18.35■□□□□ 0.53
LSM1-205ENST00000523511 MMP1P03956 469 aa18.35■□□□□ 0.53
LSM1-205ENST00000523511 CA3P07451 260 aa18.35■□□□□ 0.53
LSM1-205ENST00000523511 GHRP10912 638 aa18.35■□□□□ 0.53
LSM1-205ENST00000523511 TRMT1LQ7Z2T5 733 aaKnown RBP18.35■□□□□ 0.53
LSM1-205ENST00000523511 MYOCDQ8IZQ8 938 aa18.35■□□□□ 0.53
LSM1-205ENST00000523511 METTL13Q8N6R0 699 aa18.35■□□□□ 0.53
LSM1-205ENST00000523511 CELF4Q9BZC1 486 aaKnown RBP18.35■□□□□ 0.53
LSM1-205ENST00000523511 UNC45AQ9H3U1 944 aa18.35■□□□□ 0.53
LSM1-205ENST00000523511 SZT2Q5T011 3432 aa18.35■□□□□ 0.53
LSM1-205ENST00000523511 LARGE1O95461 756 aa18.34■□□□□ 0.53
LSM1-205ENST00000523511 OATP04181 439 aa18.34■□□□□ 0.53
LSM1-205ENST00000523511 MCM2P49736 904 aa18.34■□□□□ 0.53
LSM1-205ENST00000523511 CDC42EP1Q00587 391 aa18.34■□□□□ 0.53
LSM1-205ENST00000523511 MGAT3Q09327 533 aa18.34■□□□□ 0.53
LSM1-205ENST00000523511 GNL2Q13823 731 aaKnown RBP18.34■□□□□ 0.53
LSM1-205ENST00000523511 FBXO47Q5MNV8 452 aa18.34■□□□□ 0.53
LSM1-205ENST00000523511 CCDC83Q8IWF9 413 aa18.34■□□□□ 0.53
LSM1-205ENST00000523511 EXOC8Q8IYI6 725 aa18.34■□□□□ 0.53
LSM1-205ENST00000523511 MAFAQ8NHW3 353 aaPredicted RBP18.34■□□□□ 0.53
LSM1-205ENST00000523511 ETNPPLQ8TBG4 499 aa18.34■□□□□ 0.53
LSM1-205ENST00000523511 TRAPPC12Q8WVT3 735 aa18.34■□□□□ 0.53
LSM1-205ENST00000523511 C8orf76Q96K31 380 aa18.34■□□□□ 0.53
LSM1-205ENST00000523511 PRDM12Q9H4Q4 367 aa18.34■□□□□ 0.53
LSM1-205ENST00000523511 GTPBP6O43824 516 aaPredicted RBP18.33■□□□□ 0.52
LSM1-205ENST00000523511 EDIL3O43854 480 aa18.33■□□□□ 0.52
LSM1-205ENST00000523511 JAK2O60674 1132 aa18.33■□□□□ 0.52
LSM1-205ENST00000523511 MYOGP15173 224 aa18.33■□□□□ 0.52
LSM1-205ENST00000523511 IGFBP4P22692 258 aa18.33■□□□□ 0.52
LSM1-205ENST00000523511 DNM2P50570 870 aa18.33■□□□□ 0.52
LSM1-205ENST00000523511 DEFB103AP81534 67 aa18.33■□□□□ 0.52
LSM1-205ENST00000523511 XKR3Q5GH77 459 aa18.33■□□□□ 0.52
LSM1-205ENST00000523511 KRT40Q6A162 431 aa18.33■□□□□ 0.52
LSM1-205ENST00000523511 DIS3L2Q8IYB7 885 aaKnown RBP18.33■□□□□ 0.52
LSM1-205ENST00000523511 OXER1Q8TDS5 423 aa18.33■□□□□ 0.52
LSM1-205ENST00000523511 TOP1MTQ969P6 601 aa18.33■□□□□ 0.52
LSM1-205ENST00000523511 MAP7D2Q96T17 732 aa18.33■□□□□ 0.52
LSM1-205ENST00000523511 JPH2Q9BR39 696 aaPredicted RBP18.33■□□□□ 0.52
LSM1-205ENST00000523511 GJB4Q9NTQ9 266 aa18.33■□□□□ 0.52
LSM1-205ENST00000523511 IGSF9BQ9UPX0 1349 aa18.32■□□□□ 0.52
LSM1-205ENST00000523511 KDM3AQ9Y4C1 1321 aa18.32■□□□□ 0.52
LSM1-205ENST00000523511 BTBD18B2RXH4 712 aa18.32■□□□□ 0.52
LSM1-205ENST00000523511 ATP4AP20648 1035 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms