RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 FRA10AC1Q70Z53 315 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 NBPF15Q8N660 670 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 ZC3H12CQ9C0D7 883 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 PRR23AA6NEV1 266 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 E7EWF7 191 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 hCG_1984214I3L0E3 225 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 ZNF263O14978 683 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 ASAP2O43150 1006 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 FAM107AO95990 144 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 MARK3P27448 753 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 YWHAHQ04917 246 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 ZBTB41Q5SVQ8 909 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 LRRC8EQ6NSJ5 796 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 C16orf89Q6UX73 402 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 SYDE1Q6ZW31 735 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 RANBP17Q9H2T7 1088 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 SMYD3Q9H7B4 428 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 TMEM206Q9H813 350 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 NRBP1Q9UHY1 535 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 USP15Q9Y4E8 981 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 H0YC42 278 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 JAK2O60674 1132 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 SMARCA1P28370 1054 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 ITKQ08881 620 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 TP53BP2Q13625 1128 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 AASDHQ4L235 1098 aaPredicted RBP12□□□□□ -0.49
LIMCH1-217ENST00000512946 USHBP1Q8N6Y0 703 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 CCT7Q99832 543 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 NBNO60934 754 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 ATP2B4P23634 1241 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 SURF1Q15526 300 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 CCDC85BQ15834 202 aaPredicted RBP12□□□□□ -0.49
LIMCH1-217ENST00000512946 EXOC8Q8IYI6 725 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 LARP4BQ92615 738 aaKnown RBP12□□□□□ -0.49
LIMCH1-217ENST00000512946 ADA2Q9NZK5 511 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 SAC3D1A6NKF1 404 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 MYCNP04198 464 aaPredicted RBP12□□□□□ -0.49
LIMCH1-217ENST00000512946 EIF4A3P38919 411 aaKnown RBP12□□□□□ -0.49
LIMCH1-217ENST00000512946 PICALMQ13492 652 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 DNAJC24Q6P3W2 148 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 ZNF654Q8IZM8 581 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 RAPGEF5Q92565 580 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 MAGEB5Q9BZ81 275 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 CYP26B1Q9NR63 512 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 TBC1D7Q9P0N9 293 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 UVRAGQ9P2Y5 699 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 ARPP21Q9UBL0 812 aaPredicted RBP12□□□□□ -0.49
LIMCH1-217ENST00000512946 POGZQ7Z3K3 1410 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 CLK1P49759 484 aaKnown RBP12□□□□□ -0.49
LIMCH1-217ENST00000512946 TBC1D9BQ66K14 1250 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 OTUD7BQ6GQQ9 843 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 SETDB2Q96T68 719 aa12□□□□□ -0.49
LIMCH1-217ENST00000512946 M0QZ92 97 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 MYLK4Q86YV6 388 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 SPDYE1Q8NFV5 336 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 TADA1Q96BN2 335 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 IL17RAQ96F46 866 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 EPAS1Q99814 870 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 EDEM3Q9BZQ6 932 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 FAM129AQ9BZQ8 928 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 PARP3Q9Y6F1 533 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 NPC1L1Q9UHC9 1359 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 FANCD2Q9BXW9 1451 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 ZBED1O96006 694 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 SLC12A6Q9UHW9 1150 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 TYW5A2RUC4 315 aaKnown RBP11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 MOCS3O95396 460 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 TMC5Q6UXY8 1006 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 ATP11CQ8NB49 1132 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 ZNF473Q8WTR7 871 aaKnown RBP11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 GPBP1L1Q9HC44 474 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 SPDYE2BA6NHP3 402 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 ZBED4O75132 1171 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 SPDYE6P0CI01 402 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 SLC1A4P43007 532 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 NR5A1Q13285 461 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 FAM47EQ6ZV65 393 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 CROCCP3Q8IVE0 287 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 MFN1Q8IWA4 741 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 PDLIM2Q96JY6 352 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 GINM1Q9NU53 330 aa11.99□□□□□ -0.49
LIMCH1-217ENST00000512946 WDR91A4D1P6 747 aa11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 PIK3R2O00459 728 aa11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 PARP10Q53GL7 1025 aa11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 TPTE2Q6XPS3 522 aa11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 CCDC103Q8IW40 242 aa11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 BBS7Q8IWZ6 715 aa11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 DCLK2Q8N568 766 aa11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 CHURC1Q8WUH1 139 aa11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 GPCPD1Q9NPB8 672 aa11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 ANXA13P27216 316 aa11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 NLRP11P59045 1033 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 ALKBH5Q6P6C2 394 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 FLCNQ8NFG4 579 aa11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 CCT8L2Q96SF2 557 aa11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 SAYSD1Q9NPB0 183 aa11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 MTO1Q9Y2Z2 717 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 PITPNM2Q9BZ72 1349 aa11.98□□□□□ -0.49
LIMCH1-217ENST00000512946 K7ENM7 598 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms