RNA–Protein interactions for RNA: ENST00000512229.6

PCDHA4-202, Transcript of protocadherin alpha 4, humanhuman

TSL 1 (best) BASIC

Gene PCDHA4, Length 4,163 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA4-202ENST00000512229 MESDQ14696 234 aa14.25□□□□□ -0.13
PCDHA4-202ENST00000512229 GIMAP8Q8ND71 665 aaPredicted RBP14.25□□□□□ -0.13
PCDHA4-202ENST00000512229 ACER1Q8TDN7 264 aa14.25□□□□□ -0.13
PCDHA4-202ENST00000512229 PCDHB4Q9Y5E5 795 aa14.25□□□□□ -0.13
PCDHA4-202ENST00000512229 MYMKA6NI61 221 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 IVLP07476 585 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 NEDD9Q14511 834 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 C10orf76Q5T2E6 689 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 TUFT1Q9NNX1 390 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 SLFN12LQ6IEE8 588 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 TOGARAM2Q6ZUX3 1019 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 GGA3Q9NZ52 723 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 CEP72Q9P209 647 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 A0A1B0GTH6 734 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 SLC16A4O15374 487 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 FXR2P51116 673 aaKnown RBP eCLIP14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 RUFY4Q6ZNE9 571 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 ATP6V0A4Q9HBG4 840 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 FBXO28Q9NVF7 368 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 HESX1Q9UBX0 185 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 LIMA1Q9UHB6 759 aaKnown RBP14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 RSPH14Q9UHP6 348 aa14.24□□□□□ -0.13
PCDHA4-202ENST00000512229 CXCL9Q07325 125 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 C15orf52Q6ZUT6 534 aaKnown RBP14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 ADAT2Q7Z6V5 191 aaKnown RBP14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 AP5M1Q9H0R1 490 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 RIOX1Q9H6W3 641 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 CEP128Q6ZU80 1094 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 RNF169Q8NCN4 708 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 PPP1R14CQ8TAE6 165 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 NLRP4Q96MN2 994 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 ADGRG1Q9Y653 693 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 CACNA1FO60840 1977 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 GOLGA6CA6NDK9 693 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 CTNND1O60716 968 aaKnown RBP14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 MOCS3O95396 460 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 GOLGA6DP0CG33 693 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 CA8P35219 290 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 CAP2P40123 477 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 ECE1P42892 770 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 RBM43Q6ZSC3 357 aaKnown RBP14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 FAM167AQ96KS9 214 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 GOLGA6AQ9NYA3 693 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 DENND3A2RUS2 1198 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 LRRC53A6NM62 1247 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 TM4SF1P30408 202 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 HPDP32754 393 aaPredicted RBP14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 ZNF653Q96CK0 615 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 FAM204AQ9H8W3 233 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 KCNK9Q9NPC2 374 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 DNAJC12Q9UKB3 198 aa14.23□□□□□ -0.13
PCDHA4-202ENST00000512229 RPA1P27694 616 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 CXCR5P32302 372 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 NAA35Q5VZE5 725 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 C2orf69Q8N8R5 385 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 AFAP1L1Q8TED9 768 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 ZNF526Q8TF50 670 aaPredicted RBP14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 ANKRD36BP1Q96IX9 119 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 HINFPQ9BQA5 517 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 MSTO1Q9BUK6 570 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 EBAG9O00559 213 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 GCLMP48507 274 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 KIF22Q14807 665 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 TAF12Q16514 161 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 CPLX4Q7Z7G2 160 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 RNF34Q969K3 372 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 MIS12Q9H081 205 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 NSRP1Q9H0G5 558 aaKnown RBP14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 RNF14Q9UBS8 474 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 SMIM22K7EJ46 135 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 PDXKO00764 312 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 FTCDO95954 541 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 LDHAP00338 332 aaKnown RBP14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 IFNB1P01574 187 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 NR3C2P08235 984 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 ATF7P17544 494 aaPredicted RBP14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 TGFB2P61812 414 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 PPFIA1Q13136 1202 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 COL9A3Q14050 684 aaPredicted RBP14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 APOBEC3HQ6NTF7 200 aaKnown RBP14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 ZBTB33Q86T24 672 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 ANKS1AQ92625 1134 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 TXNDC16Q9P2K2 825 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 DLG5Q8TDM6 1919 aa14.22□□□□□ -0.13
PCDHA4-202ENST00000512229 LTN1O94822 1766 aa14.21□□□□□ -0.13
PCDHA4-202ENST00000512229 DAPK3O43293 454 aa14.21□□□□□ -0.13
PCDHA4-202ENST00000512229 SHMT1P34896 483 aa14.21□□□□□ -0.13
PCDHA4-202ENST00000512229 OSTNP61366 133 aa14.21□□□□□ -0.13
PCDHA4-202ENST00000512229 GRIK5Q16478 980 aa14.21□□□□□ -0.13
PCDHA4-202ENST00000512229 DACT2Q5SW24 774 aa14.21□□□□□ -0.13
PCDHA4-202ENST00000512229 HAUS6Q7Z4H7 955 aa14.21□□□□□ -0.13
PCDHA4-202ENST00000512229 TTC16Q8NEE8 873 aa14.21□□□□□ -0.13
PCDHA4-202ENST00000512229 AGBL1Q96MI9 1066 aa14.21□□□□□ -0.13
PCDHA4-202ENST00000512229 DDX4Q9NQI0 724 aaKnown RBP14.21□□□□□ -0.13
PCDHA4-202ENST00000512229 NXF1Q9UBU9 619 aaKnown RBP14.21□□□□□ -0.13
PCDHA4-202ENST00000512229 CLDN3O15551 220 aa14.21□□□□□ -0.13
PCDHA4-202ENST00000512229 GUCY2FP51841 1108 aa14.21□□□□□ -0.13
PCDHA4-202ENST00000512229 HADHQ16836 314 aaKnown RBP14.21□□□□□ -0.13
PCDHA4-202ENST00000512229 TCP11Q8WWU5 503 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms