RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 HERC6Q8IVU3 1022 aa13.14□□□□□ -0.31
SH3RF1-205ENST00000511421 ETNPPLQ8TBG4 499 aa13.14□□□□□ -0.31
SH3RF1-205ENST00000511421 UNC45AQ9H3U1 944 aa13.14□□□□□ -0.31
SH3RF1-205ENST00000511421 MYO9BQ13459 2157 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 FAM205CA6NFA0 338 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 WDR64B1ANS9 1081 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 ZBTB42B2RXF5 422 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 SLC37A4O43826 429 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 GAS7O60861 476 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 KRT2P35908 639 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 KCNJ6P48051 423 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 NR5A1Q13285 461 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 IKBKEQ14164 716 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 LETM2Q2VYF4 491 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 MTHFD1LQ6UB35 978 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 PIK3AP1Q6ZUJ8 805 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 NEK8Q86SG6 692 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 CCDC83Q8IWF9 413 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 ZSCAN31Q96LW9 406 aaPredicted RBP13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 TEKT3Q9BXF9 490 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 DISC1Q9NRI5 854 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 GABBR1Q9UBS5 961 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 DDX25Q9UHL0 483 aaKnown RBP13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 TCEAL9Q9UHQ7 104 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 PCDHA2Q9Y5H9 948 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 IGSF9BQ9UPX0 1349 aa13.13□□□□□ -0.31
SH3RF1-205ENST00000511421 EFCAB14O75071 495 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 MMP1P03956 469 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 KRT40Q6A162 431 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 PPP4R3AQ6IN85 833 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 TMCO2Q7Z6W1 182 aaPredicted RBP13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 RSPH3Q86UC2 560 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 BBXQ8WY36 941 aaPredicted RBP13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 MYLIPQ8WY64 445 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 LLPHQ9BRT6 129 aaKnown RBP13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 FAM49AQ9H0Q0 323 aaPredicted RBP13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 KCNMB3Q9NPA1 279 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 SAMM50Q9Y512 469 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 COL1A2P08123 1366 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 CHD9Q3L8U1 2897 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 SMIM35A0A1B0GVV1 85 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 BTBD18B2RXH4 712 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 CHMP2AO43633 222 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 ZNF862O60290 1169 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 RPLP2P05387 115 aaKnown RBP13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 GCFC2P16383 781 aaKnown RBP13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 KLRC1P26715 233 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 SFNP31947 248 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 JAK3P52333 1124 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 MRPS6P82932 125 aaKnown RBP13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 LPIN1Q14693 890 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 RABEP1Q15276 862 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 ZNF484Q5JVG2 852 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 RDM1Q8NG50 284 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 SEPT8Q92599 483 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 SLC28A3Q9HAS3 691 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 SH2B1Q9NRF2 756 aaPredicted RBP13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 CDY2AQ9Y6F7 541 aa13.12□□□□□ -0.31
SH3RF1-205ENST00000511421 ARHGEF15O94989 841 aa13.11□□□□□ -0.31
SH3RF1-205ENST00000511421 CA3P07451 260 aa13.11□□□□□ -0.31
SH3RF1-205ENST00000511421 GHRP10912 638 aa13.11□□□□□ -0.31
SH3RF1-205ENST00000511421 FOSBP53539 338 aa13.11□□□□□ -0.31
SH3RF1-205ENST00000511421 UGCGQ16739 394 aa13.11□□□□□ -0.31
SH3RF1-205ENST00000511421 FBXO47Q5MNV8 452 aa13.11□□□□□ -0.31
SH3RF1-205ENST00000511421 CKAP2LQ8IYA6 745 aa13.11□□□□□ -0.31
SH3RF1-205ENST00000511421 DIS3L2Q8IYB7 885 aaKnown RBP13.11□□□□□ -0.31
SH3RF1-205ENST00000511421 IFIH1Q9BYX4 1025 aaKnown RBP13.11□□□□□ -0.31
SH3RF1-205ENST00000511421 BRMS1Q9HCU9 246 aa13.11□□□□□ -0.31
SH3RF1-205ENST00000511421 GBF1Q92538 1859 aa13.11□□□□□ -0.31
SH3RF1-205ENST00000511421 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 KIF28PB7ZC32 967 aa13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 CCNT1O60563 726 aaKnown RBP13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 GJB5O95377 273 aa13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 C22orf31O95567 290 aa13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 PPP2R2DQ66LE6 453 aa13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 TRMT1LQ7Z2T5 733 aaKnown RBP13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 MIER3Q7Z3K6 550 aa13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 KIAA0319LQ8IZA0 1049 aa13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 NME8Q8N427 588 aa13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 HAS1Q92839 578 aa13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 APBB2Q92870 758 aa13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 FAM167AQ96KS9 214 aa13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 FAM20AQ96MK3 541 aa13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 NAP1L4Q99733 375 aaKnown RBP13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 VAV3Q9UKW4 847 aa13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 PTPRSQ13332 1948 aa13.1□□□□□ -0.31
SH3RF1-205ENST00000511421 CHD7Q9P2D1 2997 aa13.09□□□□□ -0.31
SH3RF1-205ENST00000511421 EML1O00423 815 aa13.09□□□□□ -0.31
SH3RF1-205ENST00000511421 TBX3O15119 743 aa13.09□□□□□ -0.31
SH3RF1-205ENST00000511421 TLL1O43897 1013 aa13.09□□□□□ -0.31
SH3RF1-205ENST00000511421 STBD1O95210 358 aa13.09□□□□□ -0.31
SH3RF1-205ENST00000511421 OATP04181 439 aa13.09□□□□□ -0.31
SH3RF1-205ENST00000511421 PRKCEQ02156 737 aa13.09□□□□□ -0.31
SH3RF1-205ENST00000511421 TMEM62Q0P6H9 643 aa13.09□□□□□ -0.31
SH3RF1-205ENST00000511421 TRIM29Q14134 588 aa13.09□□□□□ -0.31
SH3RF1-205ENST00000511421 IER5Q5VY09 327 aa13.09□□□□□ -0.31
SH3RF1-205ENST00000511421 POTEDQ86YR6 584 aa13.09□□□□□ -0.31
SH3RF1-205ENST00000511421 CELF4Q9BZC1 486 aaKnown RBP13.09□□□□□ -0.31
SH3RF1-205ENST00000511421 PRDM12Q9H4Q4 367 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms