RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 ALG1Q9BT22 464 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 AGXT2Q9BYV1 514 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 BCAS3Q9H6U6 928 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 EHMT1Q9H9B1 1298 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 RIC8AQ9NPQ8 531 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 PCDHA6Q9UN73 950 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 PCDHA8Q9Y5H6 950 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 PCDHA11Q9Y5I1 949 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 SNX14Q9Y5W7 946 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 UBIAD1Q9Y5Z9 338 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 TRIP12Q14669 1992 aaPredicted RBP9.15□□□□□ -0.95
SCN1A-207ENST00000507401 CNTNAP5Q8WYK1 1306 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 hCG_1642624A0A1W2PR95 340 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 SMCO2A6NFE2 343 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 GOLGA8AA7E2F4 631 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 GOLGA8BA8MQT2 603 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 EFCAB14O75071 495 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 CAND2O75155 1236 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 LGALS2P05162 132 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 ZNF286BP0CG31 522 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 GNAT1P11488 350 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 CKBP12277 381 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 ATP2A2P16615 1042 aaKnown RBP9.14□□□□□ -0.95
SCN1A-207ENST00000507401 ITGB5P18084 799 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 ADD1P35611 737 aaKnown RBP9.14□□□□□ -0.95
SCN1A-207ENST00000507401 SLC19A1P41440 591 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 RBM25P49756 843 aaKnown RBP9.14□□□□□ -0.95
SCN1A-207ENST00000507401 HMGN5P82970 282 aaKnown RBP9.14□□□□□ -0.95
SCN1A-207ENST00000507401 GPNMBQ14956 572 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 GRIN2CQ14957 1233 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 TRIM71Q2Q1W2 868 aaKnown RBP9.14□□□□□ -0.95
SCN1A-207ENST00000507401 WWC2Q6AWC2 1192 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 RNF19BQ6ZMZ0 732 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 Q6ZUG5 572 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 LRRC8DQ7L1W4 858 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 SERINC5Q86VE9 423 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 RAB11FIP4Q86YS3 637 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 PPP1R13LQ8WUF5 828 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 SEPT1Q8WYJ6 367 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 DHX38Q92620 1227 aaKnown RBP9.14□□□□□ -0.95
SCN1A-207ENST00000507401 TCEANC2Q96MN5 208 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 JAKMIP1Q96N16 626 aaKnown RBP9.14□□□□□ -0.95
SCN1A-207ENST00000507401 SLC9A7Q96T83 725 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 FTOQ9C0B1 505 aaKnown RBP eCLIP9.14□□□□□ -0.95
SCN1A-207ENST00000507401 RNPEPQ9H4A4 650 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 SLC28A3Q9HAS3 691 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 JADE2Q9NQC1 790 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 BARHL2Q9NY43 387 aa9.14□□□□□ -0.95
SCN1A-207ENST00000507401 EMSYQ7Z589 1322 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 ABHD14A-ACY1A0A1B0GW23 586 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 C17orf102A2RUQ5 167 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 ZBBXA8MT70 800 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 STXBP3O00186 592 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 PRPF3O43395 683 aaKnown RBP9.13□□□□□ -0.95
SCN1A-207ENST00000507401 GFRA3O60609 400 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 ATP9AO75110 1047 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 SMIM10L2AP0DMW4 78 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 SMIM10L2BP0DMW5 78 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 FOSL2P15408 326 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 KCNA2P16389 499 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 RPS6KB1P23443 525 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 CDC27P30260 824 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 CLK2P49760 499 aaKnown RBP9.13□□□□□ -0.95
SCN1A-207ENST00000507401 METAP2P50579 478 aaKnown RBP eCLIP9.13□□□□□ -0.95
SCN1A-207ENST00000507401 NAPAP54920 295 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 AP3B2Q13367 1082 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 MTMR1Q13613 665 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 PFKFB3Q16875 520 aaPredicted RBP9.13□□□□□ -0.95
SCN1A-207ENST00000507401 CNKSR3Q6P9H4 555 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 CCDC12Q8WUD4 166 aaPredicted RBP9.13□□□□□ -0.95
SCN1A-207ENST00000507401 MYLIPQ8WY64 445 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 BRF1Q92994 677 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 ATP6V0A1Q93050 837 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 HLA-CQ95604 372 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 MXRA8Q9BRK3 442 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 TM6SF1Q9BZW5 370 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 SLKQ9H2G2 1235 aaPredicted RBP9.13□□□□□ -0.95
SCN1A-207ENST00000507401 ZNF215Q9UL58 517 aaPredicted RBP9.13□□□□□ -0.95
SCN1A-207ENST00000507401 NOL7Q9UMY1 257 aaKnown RBP9.13□□□□□ -0.95
SCN1A-207ENST00000507401 SCN5AQ14524 2016 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 CHD9Q3L8U1 2897 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 A0A0C4DFX4 3053 aa9.13□□□□□ -0.95
SCN1A-207ENST00000507401 NID2Q14112 1375 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 NRCAMQ92823 1304 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 GSTTP1A0A1W2PQM5 241 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 ESYT2A0FGR8 921 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 RSPH10B2B2RC85 870 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 KIF28PB7ZC32 967 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 MEIS1O00470 390 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 SORBS3O60504 671 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 NBNO60934 754 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 LETM1O95202 739 aaPredicted RBP9.12□□□□□ -0.95
SCN1A-207ENST00000507401 RSPH10BP0C881 870 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 SCG2P13521 617 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 CPA1P15085 419 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 ADCY7P51828 1080 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 ADAM17P78536 824 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 ZNF200P98182 395 aaPredicted RBP9.12□□□□□ -0.95
SCN1A-207ENST00000507401 APOBRQ0VD83 1088 aa9.12□□□□□ -0.95
SCN1A-207ENST00000507401 IKBKEQ14164 716 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms