RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 RUFY4Q6ZNE9 571 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 ADAMTS19Q8TE59 1207 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 IL17RAQ96F46 866 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 ZNF274Q96GC6 653 aaPredicted RBP16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 ZNF577Q9BSK1 485 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 ZSWIM6Q9HCJ5 1215 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 ZNF302Q9NR11 478 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 TMEM260Q9NX78 707 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 CEP131Q9UPN4 1083 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 IGLV3-22A0A075B6J6 115 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 FAM86B1E9PN63 330 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 CPLX1O14810 134 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 FAM86B2P0C5J1 330 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 CPA1P15085 419 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 PDIA3P30101 505 aaKnown RBP16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 USP11P51784 963 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 NTRK3Q16288 839 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 TIGD5Q53EQ6 642 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 GALNT17Q6IS24 598 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 PDXDC2PQ6P474 469 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 FIBCD1Q8N539 461 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 GDPD5Q8WTR4 605 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 FAM167AQ96KS9 214 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 UHRF1Q96T88 793 aaPredicted RBP16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 SLC26A6Q9BXS9 759 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 SIP14410 1827 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 UNC80Q8N2C7 3258 aa16.37■□□□□ 0.21
HMGCS1-203ENST00000507004 NCOR1O75376 2440 aa16.36■□□□□ 0.21
HMGCS1-203ENST00000507004 UPP2O95045 317 aa16.36■□□□□ 0.21
HMGCS1-203ENST00000507004 PSAPP07602 524 aa16.36■□□□□ 0.21
HMGCS1-203ENST00000507004 STAG3L1P0CL83 205 aa16.36■□□□□ 0.21
HMGCS1-203ENST00000507004 EPC2Q52LR7 807 aa16.36■□□□□ 0.21
HMGCS1-203ENST00000507004 BBXQ8WY36 941 aaPredicted RBP16.36■□□□□ 0.21
HMGCS1-203ENST00000507004 MRPL38Q96DV4 380 aaKnown RBP16.36■□□□□ 0.21
HMGCS1-203ENST00000507004 CELF4Q9BZC1 486 aaKnown RBP16.36■□□□□ 0.21
HMGCS1-203ENST00000507004 FAM49AQ9H0Q0 323 aaPredicted RBP16.36■□□□□ 0.21
HMGCS1-203ENST00000507004 LMAN2LQ9H0V9 348 aa16.36■□□□□ 0.21
HMGCS1-203ENST00000507004 MTUS1Q9ULD2 1270 aa16.36■□□□□ 0.21
HMGCS1-203ENST00000507004 PCDHA10Q9Y5I2 948 aa16.36■□□□□ 0.21
HMGCS1-203ENST00000507004 H3BNC9 293 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 ENPP3O14638 875 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 DHX15O43143 795 aaKnown RBP16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 NCK2O43639 380 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 CDKL5O76039 1030 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 DEXIO95424 95 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 CCNE2O96020 404 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 BMP1P13497 986 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 NLRP5P59047 1200 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 SSRP1Q08945 709 aaKnown RBP16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 PAK2Q13177 524 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 MTHFD1LQ6UB35 978 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 TMEM192Q8IY95 271 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 PHKBQ93100 1093 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 RIT2Q99578 217 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 C17orf80Q9BSJ5 609 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 C11orf84Q9BUA3 381 aaPredicted RBP16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 IGSF9BQ9UPX0 1349 aa16.35■□□□□ 0.21
HMGCS1-203ENST00000507004 WDR64B1ANS9 1081 aa16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 C5orf67F2Z3F1 127 aa16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 DDX39AO00148 427 aaKnown RBP16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 MAGEB2O15479 319 aa16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 KLRC1P26715 233 aa16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 SFNP31947 248 aa16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 GPM6BQ13491 265 aa16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 PUS10Q3MIT2 529 aaKnown RBP16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 PRR16Q569H4 304 aa16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 SWSAP1Q6NVH7 229 aa16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 NPAS4Q8IUM7 802 aa16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 CKAP2LQ8IYA6 745 aa16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 RDM1Q8NG50 284 aa16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 PLVAPQ9BX97 442 aa16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 MAFBQ9Y5Q3 323 aaPredicted RBP16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 ADGRA3Q8IWK6 1321 aa16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 CHD9Q3L8U1 2897 aa16.34■□□□□ 0.21
HMGCS1-203ENST00000507004 TTC3P53804 2025 aa16.33■□□□□ 0.21
HMGCS1-203ENST00000507004 XBP1P17861 261 aa16.33■□□□□ 0.2
HMGCS1-203ENST00000507004 CCT2P78371 535 aaKnown RBP16.33■□□□□ 0.2
HMGCS1-203ENST00000507004 NAALADL2Q58DX5 795 aa16.33■□□□□ 0.2
HMGCS1-203ENST00000507004 MOXD1Q6UVY6 613 aa16.33■□□□□ 0.2
HMGCS1-203ENST00000507004 CCDC60Q8IWA6 550 aaPredicted RBP16.33■□□□□ 0.2
HMGCS1-203ENST00000507004 C1orf112Q9NSG2 853 aa16.33■□□□□ 0.2
HMGCS1-203ENST00000507004 PCDHA4Q9UN74 947 aa16.33■□□□□ 0.2
HMGCS1-203ENST00000507004 GPR182O15218 404 aa16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 DGKIO75912 1065 aa16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 TMOD1P28289 359 aa16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 CD52P31358 61 aa16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 BMPR1AP36894 532 aa16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 JAK3P52333 1124 aa16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 COL4A4P53420 1690 aaPredicted RBP16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 TOB2Q14106 344 aaPredicted RBP16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 BTG3Q14201 252 aaPredicted RBP16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 KRT40Q6A162 431 aa16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 SPRED2Q7Z698 418 aa16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 CMTR2Q8IYT2 770 aaKnown RBP16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 DAGLBQ8NCG7 672 aa16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 CLP1Q92989 425 aaKnown RBP16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 OSBPL7Q9BZF2 842 aa16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 AGO3Q9H9G7 860 aaKnown RBP16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 NRBP2Q9NSY0 501 aa16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 VPS54Q9P1Q0 977 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms