RNA–Protein interactions for RNA: ENST00000504849.5

RFC1-208, Transcript of replication factor C subunit 1, human

TSL 3

Gene RFC1, Length 873 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFC1-208	ENST00000504849	NBPF12	Q5TAG4	269 aa	Predicted RBP	5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	RNF219	Q5W0B1	726 aa	Predicted RBP	5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	NXN	Q6DKJ4	435 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	BORA	Q6PGQ7	559 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	UNC5A	Q6ZN44	842 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	CENPQ	Q7L2Z9	268 aa	Predicted RBP	5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	AMER2	Q8N7J2	671 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	ADGB	Q8N7X0	1667 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	UBR7	Q8N806	425 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	TDRD9	Q8NDG6	1382 aa	Known RBP	5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	ALG3	Q92685	438 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	TARS2	Q9BW92	718 aa	Known RBP	5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	ZNF341	Q9BYN7	854 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	MAF1	Q9H063	256 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	CDH19	Q9H159	772 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	GOLGA6A	Q9NYA3	693 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	ITSN2	Q9NZM3	1697 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	REV1	Q9UBZ9	1251 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	KLHL3	Q9UH77	587 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	MRPS23	Q9Y3D9	190 aa	Known RBP	5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	TESMIN	Q9Y4I5	508 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	SPEF1	Q9Y4P9	236 aa		5.1	□□□□□ -1.59
RFC1-208	ENST00000504849	CDK13	Q14004	1512 aa	Known RBP	5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	CAMSAP2	Q08AD1	1489 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	SHANK2	Q9UPX8	1470 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	BLM	P54132	1417 aa	Predicted RBP	5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	TRO	Q12816	1431 aa	Predicted RBP	5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	PARD3	Q8TEW0	1356 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	IFRD1	O00458	451 aa	Predicted RBP	5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	TNFRSF10C	O14798	259 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	BRINP1	O60477	761 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	RAPGEF3	O95398	923 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	NME1	P15531	152 aa	Known RBP	5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	POU3F2	P20265	443 aa	Predicted RBP	5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	ENDOU	P21128	410 aa	Known RBP	5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	LMO1	P25800	156 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	BMP8B	P34820	402 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	CCNF	P41002	786 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	RAB27A	P51159	221 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	RNF4	P78317	190 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	PIN1	Q13526	163 aa	Predicted RBP	5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	DHCR24	Q15392	516 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	RTP2	Q5QGT7	225 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	L1TD1	Q5T7N2	865 aa	Known RBP	5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	BICRAL	Q6AI39	1079 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	PPP4R4	Q6NUP7	873 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	SCUBE1	Q8IWY4	988 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	TCEAL8	Q8IYN2	117 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	TTC8	Q8TAM2	541 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	CPA5	Q8WXQ8	436 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	EVI5L	Q96CN4	794 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	IL17RA	Q96F46	866 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	EXOC2	Q96KP1	924 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	MPHOSPH6	Q99547	160 aa	Known RBP	5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	CDC6	Q99741	560 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	ZIM2	Q9NZV7	527 aa		5.09	□□□□□ -1.59
RFC1-208	ENST00000504849	ADAMTS12	P58397	1594 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	KDM5D	Q9BY66	1539 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	TRBV23-1	A0A0A0MS06	115 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	TRAV20	A0A0B4J274	112 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	KRTAP29-1	A8MX34	341 aa	Predicted RBP	5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	PATE3	B3GLJ2	98 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	RGS13	O14921	159 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	MUSK	O15146	869 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	KATNA1	O75449	491 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	PAX3	P23760	479 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	RPL13	P26373	211 aa	Known RBP	5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	IL12RB1	P42701	662 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	SLC7A5	Q01650	507 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	BECN1	Q14457	450 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	DHX8	Q14562	1220 aa	Known RBP	5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	HSP90AA2P	Q14568	343 aa	Predicted RBP	5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	LRRC41	Q15345	812 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	ZRSR2	Q15696	482 aa	Known RBP	5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	MIIP	Q5JXC2	388 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	FAM102B	Q5T8I3	360 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	CDCP2	Q5VXM1	449 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	SPTY2D1	Q68D10	685 aa	Predicted RBP	5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	KIAA1211L	Q6NV74	962 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	NLRC3	Q7RTR2	1065 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	PASD1	Q8IV76	773 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	FAM43A	Q8N2R8	423 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	WDR66	Q8TBY9	1149 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	IGDCC4	Q8TDY8	1250 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	CHMP4C	Q96CF2	233 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	PUS7L	Q9H0K6	701 aa	Known RBP	5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	DEF6	Q9H4E7	631 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	ANTXR1	Q9H6X2	564 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	PDLIM7	Q9NR12	457 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	SLC5A4	Q9NY91	659 aa		5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	CFDP1	Q9UEE9	299 aa	Predicted RBP	5.08	□□□□□ -1.6
RFC1-208	ENST00000504849	ANKRD50	Q9ULJ7	1429 aa		5.07	□□□□□ -1.6
RFC1-208	ENST00000504849	GPR39	O43194	453 aa		5.07	□□□□□ -1.6
RFC1-208	ENST00000504849	RFPL1	O75677	317 aa		5.07	□□□□□ -1.6
RFC1-208	ENST00000504849	U2AF1L5	P0DN76	240 aa	Predicted RBP	5.07	□□□□□ -1.6
RFC1-208	ENST00000504849	VAV1	P15498	845 aa		5.07	□□□□□ -1.6
RFC1-208	ENST00000504849	L1CAM	P32004	1257 aa		5.07	□□□□□ -1.6
RFC1-208	ENST00000504849	THBS2	P35442	1172 aa		5.07	□□□□□ -1.6
RFC1-208	ENST00000504849	SUMO1	P63165	101 aa	Known RBP	5.07	□□□□□ -1.6
RFC1-208	ENST00000504849	U2AF1	Q01081	240 aa	Known RBP eCLIP	5.07	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms