RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 MAPTP10636 758 aaKnown RBP9.36□□□□□ -0.91
SF3A1-210ENST00000498259 ADORA2AP29274 412 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 CASP1P29466 404 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 TM4SF4P48230 202 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 ACTR2P61160 394 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 SNRPFP62306 86 aaKnown RBP9.36□□□□□ -0.91
SF3A1-210ENST00000498259 FANCCQ00597 558 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 FMR1Q06787 632 aaKnown RBP eCLIP9.36□□□□□ -0.91
SF3A1-210ENST00000498259 COASYQ13057 564 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 LAMC2Q13753 1193 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 GIT2Q14161 759 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 NCAPHQ15003 741 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 ECM1Q16610 540 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 XKR3Q5GH77 459 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 RINT1Q6NUQ1 792 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 PADI6Q6TGC4 694 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 GPR142Q7Z601 462 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 DHX37Q8IY37 1157 aaKnown RBP9.36□□□□□ -0.91
SF3A1-210ENST00000498259 MYCT1Q8N699 235 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 CSGALNACT2Q8N6G5 542 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 BANK1Q8NDB2 785 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 KIFAP3Q92845 792 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 DNAJC19Q96DA6 116 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 UIMC1Q96RL1 719 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 MRPL44Q9H9J2 332 aaKnown RBP9.36□□□□□ -0.91
SF3A1-210ENST00000498259 EFCC1Q9HA90 598 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 SLC39A2Q9NP94 309 aa9.36□□□□□ -0.91
SF3A1-210ENST00000498259 CGNQ9P2M7 1197 aaKnown RBP9.36□□□□□ -0.91
SF3A1-210ENST00000498259 COL11A1P12107 1806 aaPredicted RBP9.35□□□□□ -0.91
SF3A1-210ENST00000498259 PHLPP2Q6ZVD8 1323 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 SYNGAP1Q96PV0 1343 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 EIF3DO15371 548 aaKnown RBP eCLIP9.35□□□□□ -0.91
SF3A1-210ENST00000498259 GAS2O43903 313 aaKnown RBP9.35□□□□□ -0.91
SF3A1-210ENST00000498259 ATG7O95352 703 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 PGK2P07205 417 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 MSNP26038 577 aaKnown RBP9.35□□□□□ -0.91
SF3A1-210ENST00000498259 FKBP3Q00688 224 aaKnown RBP9.35□□□□□ -0.91
SF3A1-210ENST00000498259 STK4Q13043 487 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 GRB14Q14449 540 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 KIF22Q14807 665 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 ARHGEF6Q15052 776 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 EDRF1Q3B7T1 1238 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 ZNF792Q3KQV3 632 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 BRDTQ58F21 947 aaPredicted RBP9.35□□□□□ -0.91
SF3A1-210ENST00000498259 XKR9Q5GH70 373 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 CENPPQ6IPU0 288 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 SWSAP1Q6NVH7 229 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 MAMDC4Q6UXC1 1216 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 ABHD15Q6UXT9 468 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 PAXIP1Q6ZW49 1069 aaPredicted RBP9.35□□□□□ -0.91
SF3A1-210ENST00000498259 C1orf186Q6ZWK4 172 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 CYFIP1Q7L576 1253 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 HS2ST1Q7LGA3 356 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 KCNK18Q7Z418 384 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 FAM178BQ8IXR5 827 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 PIGOQ8TEQ8 1089 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 IQCDQ96DY2 449 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 ZFP91Q96JP5 570 aaPredicted RBP9.35□□□□□ -0.91
SF3A1-210ENST00000498259 PURBQ96QR8 312 aaKnown RBP9.35□□□□□ -0.91
SF3A1-210ENST00000498259 TRPM7Q96QT4 1865 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 PTPN18Q99952 460 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 REEP2Q9BRK0 252 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 PORCNQ9H237 461 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 ABHD16BQ9H3Z7 469 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 TMEM206Q9H813 350 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 ZNF302Q9NR11 478 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 GABBR1Q9UBS5 961 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 EXOC7Q9UPT5 735 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 GDAQ9Y2T3 454 aa9.35□□□□□ -0.91
SF3A1-210ENST00000498259 LRRC10BA6NIK2 292 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 RGS20O76081 388 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 TXNP10599 105 aaKnown RBP9.34□□□□□ -0.91
SF3A1-210ENST00000498259 ZNF18P17022 549 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 RFC5P40937 340 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 RGS2P41220 211 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 RARRES1P49788 294 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 STAT5BP51692 787 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 RTP1P59025 263 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 PSMC6P62333 389 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 PPP2R3AQ06190 1150 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 EHHADHQ08426 723 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 PPP2R5AQ15172 486 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 KNOP1Q1ED39 458 aaKnown RBP9.34□□□□□ -0.91
SF3A1-210ENST00000498259 ARSHQ5FYA8 562 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 ODR4Q5SWX8 454 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 CELF3Q5SZQ8 465 aaKnown RBP9.34□□□□□ -0.91
SF3A1-210ENST00000498259 FKBP15Q5T1M5 1219 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 IQSEC1Q6DN90 963 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 ARMCX2Q7L311 632 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 PLPPR4Q7Z2D5 763 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 TRMT44Q8IYL2 757 aaKnown RBP9.34□□□□□ -0.91
SF3A1-210ENST00000498259 SMYD4Q8IYR2 804 aaPredicted RBP9.34□□□□□ -0.91
SF3A1-210ENST00000498259 AFAP1L1Q8TED9 768 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 SLC7A3Q8WY07 619 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 GLG1Q92896 1179 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 HVCN1Q96D96 273 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 CEP170P1Q96L14 293 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 IFT74Q96LB3 600 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 CEP63Q96MT8 703 aa9.34□□□□□ -0.91
SF3A1-210ENST00000498259 SMARCAD1Q9H4L7 1026 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms