RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 VSIG10LQ86VR7 867 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 SENP7Q9BQF6 1050 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 VTA1Q9NP79 307 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 TYW1Q9NV66 732 aaKnown RBP9.22□□□□□ -0.93
USP54-215ENST00000497106 RPTORQ8N122 1335 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 EXOC3O60645 756 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 PSMD10O75832 226 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 MAPTP10636 758 aaKnown RBP9.22□□□□□ -0.93
USP54-215ENST00000497106 SKILP12757 684 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 GHRHRQ02643 423 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 MKRN3Q13064 507 aaKnown RBP9.22□□□□□ -0.93
USP54-215ENST00000497106 ADAM9Q13443 819 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 NELFCDQ8IXH7 590 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 BANK1Q8NDB2 785 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 PDLIM2Q96JY6 352 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 FAM81BQ96LP2 452 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 UIMC1Q96RL1 719 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 CEP89Q96ST8 783 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 GBP3Q9H0R5 595 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 KMT5AQ9NQR1 393 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 TAB2Q9NYJ8 693 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 GABBR1Q9UBS5 961 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 ARFGEF1Q9Y6D6 1849 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 MYMKA6NI61 221 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 XRCC5P13010 732 aaKnown RBP9.22□□□□□ -0.93
USP54-215ENST00000497106 PSMC2P35998 433 aaKnown RBP9.22□□□□□ -0.93
USP54-215ENST00000497106 PRCPP42785 496 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 KRT83P78385 493 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 LAMC2Q13753 1193 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 COBLL1Q53SF7 1204 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 CEP135Q66GS9 1140 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 OTOP1Q7RTM1 612 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 CLEC4DQ8WXI8 215 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 HAS1Q92839 578 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 BEGAINQ9BUH8 593 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 TBC1D7Q9P0N9 293 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 SCN9AQ15858 1988 aa9.22□□□□□ -0.93
USP54-215ENST00000497106 PDXKO00764 312 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 FOXN1O15353 648 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 MDM2Q00987 491 aaPredicted RBP9.21□□□□□ -0.93
USP54-215ENST00000497106 EDRF1Q3B7T1 1238 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 ARHGAP29Q52LW3 1261 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 MFSD14CQ5VZR4 134 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 CCDC70Q6NSX1 233 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 TMTC1Q8IUR5 882 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 ABRAQ8N0Z2 381 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 SPAG5Q96R06 1193 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 IMPG2Q9BZV3 1241 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 C2orf40Q9H1Z8 148 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 VPS16Q9H269 839 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 KIAA1586Q9HCI6 787 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 SLC16A3O15427 465 aaKnown RBP9.21□□□□□ -0.93
USP54-215ENST00000497106 CDC42EP1Q00587 391 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 TCP11X2Q5H9J9 407 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 SLFN12LQ6IEE8 588 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 RGMBQ6NW40 437 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 KIAA1328Q86T90 577 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 SFR1Q86XK3 245 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 SOCS4Q8WXH5 440 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 SMARCAD1Q9H4L7 1026 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 ZHX1Q9UKY1 873 aaPredicted RBP9.21□□□□□ -0.93
USP54-215ENST00000497106 GDAQ9Y2T3 454 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 MYH6P13533 1939 aa9.21□□□□□ -0.93
USP54-215ENST00000497106 ARP10275 920 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 GUCY2CP25092 1073 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 RGS2P41220 211 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 RAD51AP2Q09MP3 1159 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 KNOP1Q1ED39 458 aaKnown RBP9.21□□□□□ -0.94
USP54-215ENST00000497106 UTP14CQ5TAP6 766 aaKnown RBP9.21□□□□□ -0.94
USP54-215ENST00000497106 VSTM4Q8IW00 320 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 MSL3Q8N5Y2 521 aaKnown RBP9.21□□□□□ -0.94
USP54-215ENST00000497106 PNMA5Q96PV4 448 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 MTRQ99707 1265 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 TUBGCP2Q9BSJ2 902 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 MMRN2Q9H8L6 949 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 ARHGAP6O43182 974 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 LYPLA2O95372 231 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 PTGS1P23219 599 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 LDLRAD1Q5T700 205 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 SPRYD7Q5W111 196 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 CYP26C1Q6V0L0 522 aa9.21□□□□□ -0.94
USP54-215ENST00000497106 TRMT1LQ7Z2T5 733 aaKnown RBP9.21□□□□□ -0.94
USP54-215ENST00000497106 SLC15A5A6NIM6 579 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 MED24O75448 989 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 SUPT20HL2P0C7V6 817 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 NR2F2P24468 414 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 LIG4P49917 911 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 SWSAP1Q6NVH7 229 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 PIGOQ8TEQ8 1089 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 FNBP1Q96RU3 617 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 BAG1Q99933 345 aaPredicted RBP9.2□□□□□ -0.94
USP54-215ENST00000497106 NUDT12Q9BQG2 462 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 LIMA1Q9UHB6 759 aaKnown RBP9.2□□□□□ -0.94
USP54-215ENST00000497106 GGPS1O95749 300 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 TXNP10599 105 aaKnown RBP9.2□□□□□ -0.94
USP54-215ENST00000497106 CYP11B2P19099 503 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 ICAM3P32942 547 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 FCGRTP55899 365 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 PTPN14Q15678 1187 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 KIAA1755Q5JYT7 1200 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms