RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, human

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD3-208	ENST00000497026	TP53	P04637	393 aa	Predicted RBP	6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	PCCA	P05165	728 aa	Predicted RBP	6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	CCNF	P41002	786 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	CTSK	P43235	329 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	CASP7	P55210	303 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	ADGRF1	Q5T601	910 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	SOGA3	Q5TF21	947 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	CRTC3	Q6UUV7	619 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	PPFIBP1	Q86W92	1011 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	C1QL4	Q86Z23	238 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	CCDC144CP	Q8IYA2	1237 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	TOX2	Q96NM4	488 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	PLCD4	Q9BRC7	762 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	CDADC1	Q9BWV3	514 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	MCOLN1	Q9GZU1	580 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	CWC22	Q9HCG8	908 aa	Known RBP	6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	NMRK2	Q9NPI5	230 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	METTL5	Q9NRN9	209 aa	Known RBP	6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	CWC25	Q9NXE8	425 aa	Predicted RBP	6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	SUCO	Q9UBS9	1254 aa	Known RBP	6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	DDX41	Q9UJV9	622 aa	Known RBP	6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	CDHR2	Q9BYE9	1310 aa		6.1	□□□□□ -1.43
CSMD3-208	ENST00000497026	TCAF2	A6NFQ2	919 aa		6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026		B8ZZF3	427 aa		6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	RRP9	O43818	475 aa	Known RBP	6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	PAK2	Q13177	524 aa		6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	GRAP	Q13588	217 aa		6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	DCAF15	Q66K64	600 aa		6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	LCNL1	Q6ZST4	164 aa		6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	NLRX1	Q86UT6	975 aa		6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	RTKN2	Q8IZC4	609 aa		6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	GRAPL	Q8TC17	118 aa	Predicted RBP	6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	DNAAF4	Q8WXU2	420 aa		6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	CELF1	Q92879	486 aa	Known RBP	6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	RBM17	Q96I25	401 aa	Known RBP	6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	PSMD1	Q99460	953 aa		6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	ZNF277	Q9NRM2	450 aa	Predicted RBP	6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	SMG5	Q9UPR3	1016 aa	Known RBP	6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	ZNF541	Q9H0D2	1346 aa		6.09	□□□□□ -1.43
CSMD3-208	ENST00000497026	PDE8A	O60658	829 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	IARS	P41252	1262 aa	Known RBP	6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	RTP1	P59025	263 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	GCKR	Q14397	625 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	SNX17	Q15036	470 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	AXDND1	Q5T1B0	1012 aa	Predicted RBP	6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	BEND3	Q5T5X7	828 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	DDX46	Q7L014	1031 aa	Known RBP	6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	IRF2BP1	Q8IU81	584 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	HOMEZ	Q8IX15	550 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	LINS1	Q8NG48	757 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	SSH1	Q8WYL5	1049 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	BRF1	Q92994	677 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	DSCC1	Q9BVC3	393 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	CD320	Q9NPF0	282 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	GINM1	Q9NU53	330 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	AP5S1	Q9NUS5	200 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	GPR55	Q9Y2T6	319 aa	Predicted RBP	6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	ATP6V0A2	Q9Y487	856 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	ZNF646	O15015	1829 aa	Predicted RBP	6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	SCN4A	P35499	1836 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	ADAMTSL1	Q8N6G6	1762 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	PSME4	Q14997	1843 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	GLTPD2	A6NH11	291 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	SHOX	O15266	292 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	NRDC	O43847	1150 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	BBOX1	O75936	387 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	VAV1	P15498	845 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	CTSW	P56202	376 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	C1QTNF8	P60827	252 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	IRX6	P78412	446 aa	Predicted RBP	6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	NEXN	Q0ZGT2	675 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	KCNA10	Q16322	511 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	UNC5A	Q6ZN44	842 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	UBE3B	Q7Z3V4	1068 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	SP8	Q8IXZ3	490 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	C7orf61	Q8IZ16	206 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	TTLL11	Q8NHH1	800 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	DHRS1	Q96LJ7	313 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	PLA2G12B	Q9BX93	195 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	RTFDC1	Q9BY42	306 aa	Predicted RBP	6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	ZNF552	Q9H707	407 aa	Predicted RBP	6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	EFR3B	Q9Y2G0	817 aa		6.08	□□□□□ -1.44
CSMD3-208	ENST00000497026	RTL9	Q8NET4	1388 aa		6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	SCN9A	Q15858	1988 aa		6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	KDM2B	Q8NHM5	1336 aa		6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	OR14I1	A6ND48	311 aa		6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	FZD9	O00144	591 aa		6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	SCAMP3	O14828	347 aa	Known RBP	6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	DDN	O94850	711 aa	Predicted RBP	6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	ZSCAN22	P10073	491 aa	Predicted RBP	6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	IMPDH2	P12268	514 aa		6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	GLDC	P23378	1020 aa		6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	KIR2DL1	P43626	348 aa	Predicted RBP	6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	KIR2DL2	P43627	348 aa	Predicted RBP	6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	PMS1	P54277	932 aa	Known RBP	6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	DLG4	P78352	724 aa		6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	INTS3	Q68E01	1043 aa	Known RBP	6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	METTL16	Q86W50	562 aa	Known RBP	6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	LSR	Q86X29	649 aa	Predicted RBP	6.07	□□□□□ -1.44
CSMD3-208	ENST00000497026	ZNF654	Q8IZM8	581 aa		6.07	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms