RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 MT-ND3P03897 115 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 CMA1P23946 247 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 PDIA3P30101 505 aaKnown RBP14.12□□□□□ -0.15
COL6A3-212ENST00000491769 MAPK6Q16659 721 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 SPON2Q9BUD6 331 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 PALLDQ8WX93 1383 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 GOLGA8KD6RF30 607 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 E5RI56 91 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 CLDN3O15551 220 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 IFNAR2P48551 515 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 NDUFA8P51970 172 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 TRIM42Q8IWZ5 723 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 SMYD4Q8IYR2 804 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-212ENST00000491769 ABCB11O95342 1321 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 ZNF157P51786 506 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-212ENST00000491769 ART3Q13508 389 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 P2RX5Q93086 422 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 SPATA33Q96N06 139 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 H3BRJ5 948 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 CFLARO15519 480 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 TAC1P20366 129 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 TAF11Q15544 211 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 C10orf76Q5T2E6 689 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 BZW1Q7L1Q6 419 aaKnown RBP14.11□□□□□ -0.15
COL6A3-212ENST00000491769 TRIM59Q8IWR1 403 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 EXOC4Q96A65 974 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 VPS39Q96JC1 886 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 USP44Q9H0E7 712 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 ABCC12Q96J65 1359 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 LDHAP00338 332 aaKnown RBP14.11□□□□□ -0.15
COL6A3-212ENST00000491769 ZNF513Q8N8E2 541 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-212ENST00000491769 SP110Q9HB58 689 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 ZNF302Q9NR11 478 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 EMILIN3Q9NT22 766 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 F5H423 210 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-212ENST00000491769 GPC3P51654 580 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 BLVRAP53004 296 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 PROSER3Q2NL68 480 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 BBS9Q3SYG4 887 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 FAF2Q96CS3 445 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 CFAP69A5D8W1 941 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 TBK1Q9UHD2 729 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 STRIP2Q9ULQ0 834 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 PCDHA7Q9UN72 937 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 MYO3BQ8WXR4 1341 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 DNAJC6O75061 913 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 TM6SF1Q9BZW5 370 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 FEM1BQ9UK73 627 aa14.11□□□□□ -0.15
COL6A3-212ENST00000491769 ZNF699Q32M78 642 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 ULK4Q96C45 1275 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 SPZ1Q9BXG8 430 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 GINM1Q9NU53 330 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 MAP3K20Q9NYL2 800 aaKnown RBP14.1□□□□□ -0.15
COL6A3-212ENST00000491769 PPP2R2CQ9Y2T4 447 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 HIP1RO75146 1068 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 CLCN1P35523 988 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 GPSM2P81274 684 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 SCRN1Q12765 414 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 TAS2R42Q7RTR8 314 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 PIGOQ8TEQ8 1089 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 GIPC2Q8TF65 315 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 RNF26Q9BY78 433 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-212ENST00000491769 TRIM45Q9H8W5 580 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-212ENST00000491769 SCHIP1Q9P0W5 487 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-212ENST00000491769 PI4K2BG5E9Z4 385 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 SRRM1Q8IYB3 904 aaKnown RBP14.1□□□□□ -0.15
COL6A3-212ENST00000491769 ELP3Q9H9T3 547 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 SPON1Q9HCB6 807 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 WDR91A4D1P6 747 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 USP17L10C9JJH3 530 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 EEF1B2P24534 225 aaKnown RBP14.1□□□□□ -0.15
COL6A3-212ENST00000491769 RAD51Q06609 339 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 NME3Q13232 169 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 ATG16L1Q676U5 607 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 NDFIP2Q9NV92 336 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 FAM196BA6NMK8 535 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 ADORA2BP29275 332 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 PLTPP55058 493 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 NLRP10Q86W26 655 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 SH3RF3Q8TEJ3 882 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-212ENST00000491769 EGFL8Q99944 293 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 GCOM2Q9BZD3 368 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-212ENST00000491769 DRC3Q9H069 523 aa14.1□□□□□ -0.15
COL6A3-212ENST00000491769 EPN1Q9Y6I3 576 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-212ENST00000491769 NPHP4O75161 1426 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-212ENST00000491769 ADD2P35612 726 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 TAF1CQ15572 869 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-212ENST00000491769 TAF1BQ53T94 588 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-212ENST00000491769 DAAM1Q9Y4D1 1078 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 SPP2Q13103 211 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 GPBP1L1Q9HC44 474 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-212ENST00000491769 TLR7Q9NYK1 1049 aaKnown RBP14.09□□□□□ -0.15
COL6A3-212ENST00000491769 CA4P22748 312 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 TRAPPC10P48553 1259 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 ZKSCAN8Q15776 578 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-212ENST00000491769 ACAP3Q96P50 834 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 FOXP1Q9H334 677 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-212ENST00000491769 HAUS4Q9H6D7 363 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 ANLNQ9NQW6 1124 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 RNF146Q9NTX7 359 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms