RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 PKN1Q16512 942 aa15.52■□□□□ 0.08
COL6A3-211ENST00000491233 PTPROQ16827 1216 aa15.52■□□□□ 0.08
COL6A3-211ENST00000491233 TIGD5Q53EQ6 642 aa15.52■□□□□ 0.08
COL6A3-211ENST00000491233 IER5Q5VY09 327 aa15.52■□□□□ 0.08
COL6A3-211ENST00000491233 FAM160B1Q5W0V3 765 aa15.52■□□□□ 0.08
COL6A3-211ENST00000491233 POTEBQ6S5H4 581 aa15.52■□□□□ 0.08
COL6A3-211ENST00000491233 CCDC60Q8IWA6 550 aaPredicted RBP15.52■□□□□ 0.08
COL6A3-211ENST00000491233 FIBCD1Q8N539 461 aa15.52■□□□□ 0.08
COL6A3-211ENST00000491233 LINC01599Q8WXQ3 324 aa15.52■□□□□ 0.08
COL6A3-211ENST00000491233 IL17RAQ96F46 866 aa15.52■□□□□ 0.08
COL6A3-211ENST00000491233 UIMC1Q96RL1 719 aa15.52■□□□□ 0.08
COL6A3-211ENST00000491233 AGXT2Q9BYV1 514 aa15.52■□□□□ 0.08
COL6A3-211ENST00000491233 ZMYND12Q9H0C1 365 aa15.52■□□□□ 0.08
COL6A3-211ENST00000491233 RC3H2Q9HBD1 1191 aaKnown RBP15.52■□□□□ 0.08
COL6A3-211ENST00000491233 C6orf50Q9HD87 102 aa15.52■□□□□ 0.08
COL6A3-211ENST00000491233 PCDHA2Q9Y5H9 948 aa15.52■□□□□ 0.08
COL6A3-211ENST00000491233 NCOR1O75376 2440 aa15.51■□□□□ 0.07
COL6A3-211ENST00000491233 IGKV6D-21A0A0A0MT36 114 aa15.51■□□□□ 0.07
COL6A3-211ENST00000491233 ENPP3O14638 875 aa15.51■□□□□ 0.07
COL6A3-211ENST00000491233 PRPF3O43395 683 aaKnown RBP15.51■□□□□ 0.07
COL6A3-211ENST00000491233 PPFIA3O75145 1194 aa15.51■□□□□ 0.07
COL6A3-211ENST00000491233 CYP3A4P08684 503 aa15.51■□□□□ 0.07
COL6A3-211ENST00000491233 CTNNB1P35222 781 aa15.51■□□□□ 0.07
COL6A3-211ENST00000491233 SLC26A2P50443 739 aa15.51■□□□□ 0.07
COL6A3-211ENST00000491233 SETQ01105 290 aaPredicted RBP15.51■□□□□ 0.07
COL6A3-211ENST00000491233 ABHD15Q6UXT9 468 aa15.51■□□□□ 0.07
COL6A3-211ENST00000491233 RASGRP4Q8TDF6 673 aa15.51■□□□□ 0.07
COL6A3-211ENST00000491233 COL1A2P08123 1366 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 IGSF9BQ9UPX0 1349 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 SMIM35A0A1B0GVV1 85 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 IPO5O00410 1097 aaKnown RBP15.5■□□□□ 0.07
COL6A3-211ENST00000491233 DHX15O43143 795 aaKnown RBP15.5■□□□□ 0.07
COL6A3-211ENST00000491233 HBP1O60381 514 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 LINC00271P0C7V0 271 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 AKAP17AQ02040 695 aaKnown RBP15.5■□□□□ 0.07
COL6A3-211ENST00000491233 PAK2Q13177 524 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 NTRK3Q16288 839 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 MCTP2Q6DN12 878 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 MTHFD1LQ6UB35 978 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 FBXL16Q8N461 479 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 CCDC148Q8NFR7 591 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 ATP8B4Q8TF62 1192 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 ZNF577Q9BSK1 485 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 SLC26A6Q9BXS9 759 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 RNF26Q9BY78 433 aaPredicted RBP15.5■□□□□ 0.07
COL6A3-211ENST00000491233 CELF4Q9BZC1 486 aaKnown RBP15.5■□□□□ 0.07
COL6A3-211ENST00000491233 ZNF302Q9NR11 478 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 SQORQ9Y6N5 450 aa15.5■□□□□ 0.07
COL6A3-211ENST00000491233 KDM3AQ9Y4C1 1321 aa15.49■□□□□ 0.07
COL6A3-211ENST00000491233 KCNA5P22460 613 aa15.49■□□□□ 0.07
COL6A3-211ENST00000491233 KLRC1P26715 233 aa15.49■□□□□ 0.07
COL6A3-211ENST00000491233 PSMA5P28066 241 aa15.49■□□□□ 0.07
COL6A3-211ENST00000491233 GNA11P29992 359 aa15.49■□□□□ 0.07
COL6A3-211ENST00000491233 CCT2P78371 535 aaKnown RBP15.49■□□□□ 0.07
COL6A3-211ENST00000491233 KRT76Q01546 638 aa15.49■□□□□ 0.07
COL6A3-211ENST00000491233 BTG3Q14201 252 aaPredicted RBP15.49■□□□□ 0.07
COL6A3-211ENST00000491233 MIS18BP1Q6P0N0 1132 aa15.49■□□□□ 0.07
COL6A3-211ENST00000491233 PDXDC2PQ6P474 469 aa15.49■□□□□ 0.07
COL6A3-211ENST00000491233 BANK1Q8NDB2 785 aa15.49■□□□□ 0.07
COL6A3-211ENST00000491233 FTHL17Q9BXU8 183 aa15.49■□□□□ 0.07
COL6A3-211ENST00000491233 NCOA5Q9HCD5 579 aaKnown RBP15.49■□□□□ 0.07
COL6A3-211ENST00000491233 VPS54Q9P1Q0 977 aa15.49■□□□□ 0.07
COL6A3-211ENST00000491233 PADI3Q9ULW8 664 aa15.49■□□□□ 0.07
COL6A3-211ENST00000491233 FNDC1Q4ZHG4 1894 aaPredicted RBP15.48■□□□□ 0.07
COL6A3-211ENST00000491233 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.48■□□□□ 0.07
COL6A3-211ENST00000491233 C5orf67F2Z3F1 127 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 DGKIO75912 1065 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 IFNAR1P17181 557 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 TMEM266Q2M3C6 531 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 LEXMQ3ZCV2 418 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 PRR16Q569H4 304 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 TCEAL5Q5H9L2 206 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 ZNF746Q6NUN9 644 aaPredicted RBP15.48■□□□□ 0.07
COL6A3-211ENST00000491233 SWSAP1Q6NVH7 229 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 RTN4RL1Q86UN2 441 aaPredicted RBP15.48■□□□□ 0.07
COL6A3-211ENST00000491233 CKAP2LQ8IYA6 745 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 BICD2Q8TD16 824 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 ZNF689Q96CS4 500 aaPredicted RBP15.48■□□□□ 0.07
COL6A3-211ENST00000491233 C11orf84Q9BUA3 381 aaPredicted RBP15.48■□□□□ 0.07
COL6A3-211ENST00000491233 NSUN3Q9H649 340 aaKnown RBP15.48■□□□□ 0.07
COL6A3-211ENST00000491233 TBC1D22BQ9NU19 505 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 TCEAL9Q9UHQ7 104 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 GINS2Q9Y248 185 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 RWDD3Q9Y3V2 267 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 PLXNA4Q9HCM2 1894 aa15.48■□□□□ 0.07
COL6A3-211ENST00000491233 XIRP2A4UGR9 3374 aa15.47■□□□□ 0.07
COL6A3-211ENST00000491233 RB1P06400 928 aa15.47■□□□□ 0.07
COL6A3-211ENST00000491233 ATP4AP20648 1035 aa15.47■□□□□ 0.07
COL6A3-211ENST00000491233 COL9A1P20849 921 aa15.47■□□□□ 0.07
COL6A3-211ENST00000491233 PDIA3P30101 505 aaKnown RBP15.47■□□□□ 0.07
COL6A3-211ENST00000491233 BMPR1AP36894 532 aa15.47■□□□□ 0.07
COL6A3-211ENST00000491233 EVCP57679 992 aa15.47■□□□□ 0.07
COL6A3-211ENST00000491233 ZNF484Q5JVG2 852 aa15.47■□□□□ 0.07
COL6A3-211ENST00000491233 NPAS4Q8IUM7 802 aa15.47■□□□□ 0.07
COL6A3-211ENST00000491233 SMAP1Q8IYB5 467 aaPredicted RBP15.47■□□□□ 0.07
COL6A3-211ENST00000491233 NME8Q8N427 588 aa15.47■□□□□ 0.07
COL6A3-211ENST00000491233 CLP1Q92989 425 aaKnown RBP15.47■□□□□ 0.07
COL6A3-211ENST00000491233 TMX1Q9H3N1 280 aa15.47■□□□□ 0.07
COL6A3-211ENST00000491233 MRPL42Q9Y6G3 142 aaKnown RBP15.47■□□□□ 0.07
COL6A3-211ENST00000491233 MUC3AQ02505 3323 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms