RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 FAM43BQ6ZT52 329 aaPredicted RBP9.45□□□□□ -0.9
USP39-216ENST00000490193 NPAS4Q8IUM7 802 aa9.45□□□□□ -0.9
USP39-216ENST00000490193 SPPL3Q8TCT6 385 aa9.45□□□□□ -0.9
USP39-216ENST00000490193 GPRASP2Q96D09 838 aa9.45□□□□□ -0.9
USP39-216ENST00000490193 FTHL17Q9BXU8 183 aa9.45□□□□□ -0.9
USP39-216ENST00000490193 IGFLR1Q9H665 355 aa9.45□□□□□ -0.9
USP39-216ENST00000490193 ALG13Q9NP73 1137 aaKnown RBP9.45□□□□□ -0.9
USP39-216ENST00000490193 ERAP1Q9NZ08 941 aa9.45□□□□□ -0.9
USP39-216ENST00000490193 RTEL1Q9NZ71 1219 aa9.45□□□□□ -0.9
USP39-216ENST00000490193 TUBE1Q9UJT0 475 aa9.45□□□□□ -0.9
USP39-216ENST00000490193 SUPT16HQ9Y5B9 1047 aaKnown RBP9.45□□□□□ -0.9
USP39-216ENST00000490193 MRPL42Q9Y6G3 142 aaKnown RBP9.45□□□□□ -0.9
USP39-216ENST00000490193 CACNA1HO95180 2353 aa9.44□□□□□ -0.9
USP39-216ENST00000490193 GLP2RO95838 553 aa9.44□□□□□ -0.9
USP39-216ENST00000490193 KCNA2P16389 499 aa9.44□□□□□ -0.9
USP39-216ENST00000490193 TCF7P36402 384 aaPredicted RBP9.44□□□□□ -0.9
USP39-216ENST00000490193 MRPS6P82932 125 aaKnown RBP9.44□□□□□ -0.9
USP39-216ENST00000490193 ZXDAP98168 799 aa9.44□□□□□ -0.9
USP39-216ENST00000490193 TCF15Q12870 199 aa9.44□□□□□ -0.9
USP39-216ENST00000490193 AAMPQ13685 434 aa9.44□□□□□ -0.9
USP39-216ENST00000490193 GRIK4Q16099 956 aa9.44□□□□□ -0.9
USP39-216ENST00000490193 ADGRD2Q7Z7M1 963 aa9.44□□□□□ -0.9
USP39-216ENST00000490193 RTN4RL1Q86UN2 441 aaPredicted RBP9.44□□□□□ -0.9
USP39-216ENST00000490193 NLRX1Q86UT6 975 aa9.44□□□□□ -0.9
USP39-216ENST00000490193 FBXL6Q8N531 539 aa9.44□□□□□ -0.9
USP39-216ENST00000490193 PBXIP1Q96AQ6 731 aa9.44□□□□□ -0.9
USP39-216ENST00000490193 CDHR1Q96JP9 859 aa9.44□□□□□ -0.9
USP39-216ENST00000490193 MAP3K14Q99558 947 aa9.44□□□□□ -0.9
USP39-216ENST00000490193 AGO3Q9H9G7 860 aaKnown RBP9.44□□□□□ -0.9
USP39-216ENST00000490193 CDY2AQ9Y6F7 541 aa9.44□□□□□ -0.9
USP39-216ENST00000490193 PLXNA3P51805 1871 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 IGSF9BQ9UPX0 1349 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 KDM3AQ9Y4C1 1321 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.43□□□□□ -0.9
USP39-216ENST00000490193 GSTTP1A0A1W2PQM5 241 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 FSD2A1L4K1 749 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 RRN3P2A6NIE6 340 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 MEIS2O14770 477 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 STAG3L1P0CL83 205 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 ATF7P17544 494 aaPredicted RBP9.43□□□□□ -0.9
USP39-216ENST00000490193 SMARCA1P28370 1054 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 SP4Q02446 784 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 UBE3AQ05086 875 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 SIGLEC14Q08ET2 396 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 TRDNQ13061 729 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 CHD1LQ86WJ1 897 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 SUGP1Q8IWZ8 645 aaKnown RBP9.43□□□□□ -0.9
USP39-216ENST00000490193 KLHL23Q8NBE8 558 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 POF1BQ8WVV4 589 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 DNAJB3Q8WWF6 145 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 SEPT1Q8WYJ6 367 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 SUSD6Q92537 303 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 PHF7Q9BWX1 381 aaPredicted RBP9.43□□□□□ -0.9
USP39-216ENST00000490193 SPZ1Q9BXG8 430 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 IL25Q9H293 177 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 SMARCAD1Q9H4L7 1026 aa9.43□□□□□ -0.9
USP39-216ENST00000490193 USP15Q9Y4E8 981 aaPredicted RBP9.43□□□□□ -0.9
USP39-216ENST00000490193 CACNA1AO00555 2505 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 ERICH2A1L162 156 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 IFIT3O14879 490 aaKnown RBP9.42□□□□□ -0.9
USP39-216ENST00000490193 MAFGO15525 162 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 ATP9AO75110 1047 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 ITGB5P18084 799 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 CD52P31358 61 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 NRIP1P48552 1158 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 NUCB1Q02818 461 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 WTAPQ15007 396 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 IER5Q5VY09 327 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 USP17L6PQ6QN14 398 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 SMARCC2Q8TAQ2 1214 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 ATP8B4Q8TF62 1192 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 CUL5Q93034 780 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 ASIC4Q96FT7 647 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 CDCA3Q99618 268 aaPredicted RBP9.42□□□□□ -0.9
USP39-216ENST00000490193 IRF2BPLQ9H1B7 796 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 SENP2Q9HC62 589 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 PADI3Q9ULW8 664 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 TRPV2Q9Y5S1 764 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 MYO15AQ9UKN7 3530 aa9.42□□□□□ -0.9
USP39-216ENST00000490193 CYP21A2P08686 494 aa9.41□□□□□ -0.9
USP39-216ENST00000490193 SCG2P13521 617 aa9.41□□□□□ -0.9
USP39-216ENST00000490193 INSRRP14616 1297 aa9.41□□□□□ -0.9
USP39-216ENST00000490193 MARK3P27448 753 aa9.41□□□□□ -0.9
USP39-216ENST00000490193 KCNC3Q14003 757 aa9.41□□□□□ -0.9
USP39-216ENST00000490193 SART3Q15020 963 aaKnown RBP9.41□□□□□ -0.9
USP39-216ENST00000490193 PDE12Q6L8Q7 609 aaKnown RBP9.41□□□□□ -0.9
USP39-216ENST00000490193 TMEM184AQ6ZMB5 413 aa9.41□□□□□ -0.9
USP39-216ENST00000490193 CATIPQ7Z7H3 387 aa9.41□□□□□ -0.9
USP39-216ENST00000490193 GLG1Q92896 1179 aa9.41□□□□□ -0.9
USP39-216ENST00000490193 TNPO1Q92973 898 aaKnown RBP9.41□□□□□ -0.9
USP39-216ENST00000490193 PCYT2Q99447 389 aa9.41□□□□□ -0.9
USP39-216ENST00000490193 BARX2Q9UMQ3 279 aaPredicted RBP9.41□□□□□ -0.9
USP39-216ENST00000490193 PCDHA2Q9Y5H9 948 aa9.41□□□□□ -0.9
USP39-216ENST00000490193 UBIAD1Q9Y5Z9 338 aa9.41□□□□□ -0.9
USP39-216ENST00000490193 ZFHX2Q9C0A1 2572 aaPredicted RBP9.4□□□□□ -0.9
USP39-216ENST00000490193 SMIM35A0A1B0GVV1 85 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 M0QZ92 97 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 DDAH1O94760 285 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 CSPG5O95196 566 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 SARSP49591 514 aaKnown RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms