RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 LAG3P18627 525 aa13.47□□□□□ -0.25
HDAC6-233ENST00000489352 SMC1AQ14683 1233 aaKnown RBP13.47□□□□□ -0.25
HDAC6-233ENST00000489352 LMBR1Q8WVP7 490 aa13.47□□□□□ -0.25
HDAC6-233ENST00000489352 SPATA6Q9NWH7 488 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-233ENST00000489352 RAB23Q9ULC3 237 aa13.47□□□□□ -0.25
HDAC6-233ENST00000489352 CDY2AQ9Y6F7 541 aa13.47□□□□□ -0.25
HDAC6-233ENST00000489352 CNOT1A5YKK6 2376 aaKnown RBP13.47□□□□□ -0.25
HDAC6-233ENST00000489352 ZZEF1O43149 2961 aa13.47□□□□□ -0.25
HDAC6-233ENST00000489352 M0QZ92 97 aa13.46□□□□□ -0.25
HDAC6-233ENST00000489352 RANBP6O60518 1105 aaKnown RBP13.46□□□□□ -0.25
HDAC6-233ENST00000489352 NMT2O60551 498 aa13.46□□□□□ -0.25
HDAC6-233ENST00000489352 TGFB3P10600 412 aa13.46□□□□□ -0.25
HDAC6-233ENST00000489352 HSPD1P10809 573 aaKnown RBP13.46□□□□□ -0.25
HDAC6-233ENST00000489352 PLCB3Q01970 1234 aa13.46□□□□□ -0.25
HDAC6-233ENST00000489352 CSTF1Q05048 431 aaKnown RBP13.46□□□□□ -0.25
HDAC6-233ENST00000489352 PHLDB3Q6NSJ2 640 aa13.46□□□□□ -0.25
HDAC6-233ENST00000489352 RTN4RL1Q86UN2 441 aaPredicted RBP13.46□□□□□ -0.25
HDAC6-233ENST00000489352 IFNL3Q8IZI9 196 aa13.46□□□□□ -0.25
HDAC6-233ENST00000489352 LINC01599Q8WXQ3 324 aa13.46□□□□□ -0.25
HDAC6-233ENST00000489352 TBC1D5Q92609 795 aa13.46□□□□□ -0.25
HDAC6-233ENST00000489352 TYW1Q9NV66 732 aaKnown RBP13.46□□□□□ -0.25
HDAC6-233ENST00000489352 FBXO4Q9UKT5 387 aa13.46□□□□□ -0.25
HDAC6-233ENST00000489352 ZMIZ1Q9ULJ6 1067 aa13.46□□□□□ -0.25
HDAC6-233ENST00000489352 SUPT16HQ9Y5B9 1047 aaKnown RBP13.46□□□□□ -0.25
HDAC6-233ENST00000489352 DOCK5Q9H7D0 1870 aa13.46□□□□□ -0.26
HDAC6-233ENST00000489352 ABCB11O95342 1321 aa13.45□□□□□ -0.26
HDAC6-233ENST00000489352 PATL2C9JE40 543 aaKnown RBP13.45□□□□□ -0.26
HDAC6-233ENST00000489352 TBC1D4O60343 1298 aa13.45□□□□□ -0.26
HDAC6-233ENST00000489352 ATP5JP18859 108 aa13.45□□□□□ -0.26
HDAC6-233ENST00000489352 MGAT3Q09327 533 aa13.45□□□□□ -0.26
HDAC6-233ENST00000489352 PAK2Q13177 524 aa13.45□□□□□ -0.26
HDAC6-233ENST00000489352 IER5Q5VY09 327 aa13.45□□□□□ -0.26
HDAC6-233ENST00000489352 TMEM57Q8N5G2 664 aa13.45□□□□□ -0.26
HDAC6-233ENST00000489352 DNAJB3Q8WWF6 145 aa13.45□□□□□ -0.26
HDAC6-233ENST00000489352 PXMP2Q9NR77 195 aa13.45□□□□□ -0.26
HDAC6-233ENST00000489352 IL17RBQ9NRM6 502 aa13.45□□□□□ -0.26
HDAC6-233ENST00000489352 COL20A1Q9P218 1284 aa13.45□□□□□ -0.26
HDAC6-233ENST00000489352 SPEGQ15772 3267 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 ZNF316A6NFI3 1004 aaPredicted RBP13.44□□□□□ -0.26
HDAC6-233ENST00000489352 UBA1P22314 1058 aaKnown RBP13.44□□□□□ -0.26
HDAC6-233ENST00000489352 PPM1AP35813 382 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 SHC2P98077 582 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 PPARAQ07869 468 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 SPEM2Q0P670 501 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 UTP14CQ5TAP6 766 aaKnown RBP13.44□□□□□ -0.26
HDAC6-233ENST00000489352 IL31Q6EBC2 164 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 KANK3Q6NY19 840 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 TMC5Q6UXY8 1006 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 CABP7Q86V35 215 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 MRPL43Q8N983 215 aaKnown RBP13.44□□□□□ -0.26
HDAC6-233ENST00000489352 KIF1BPQ96EK5 621 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 BCO2Q9BYV7 579 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 NAPBQ9H115 298 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 EPC1Q9H2F5 836 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 AGO3Q9H9G7 860 aaKnown RBP13.44□□□□□ -0.26
HDAC6-233ENST00000489352 EPB41L4AQ9HCS5 686 aaPredicted RBP13.44□□□□□ -0.26
HDAC6-233ENST00000489352 DLGAP2Q9P1A6 1054 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 PADI3Q9ULW8 664 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.44□□□□□ -0.26
HDAC6-233ENST00000489352 SQORQ9Y6N5 450 aa13.44□□□□□ -0.26
HDAC6-233ENST00000489352 C2orf71A6NGG8 1288 aa13.43□□□□□ -0.26
HDAC6-233ENST00000489352 POTEMA6NI47 508 aa13.43□□□□□ -0.26
HDAC6-233ENST00000489352 GPAA1O43292 621 aa13.43□□□□□ -0.26
HDAC6-233ENST00000489352 CLASP2O75122 1294 aaKnown RBP13.43□□□□□ -0.26
HDAC6-233ENST00000489352 CFBP00751 764 aa13.43□□□□□ -0.26
HDAC6-233ENST00000489352 RPLP2P05387 115 aaKnown RBP13.43□□□□□ -0.26
HDAC6-233ENST00000489352 TOP1P11387 765 aaKnown RBP13.43□□□□□ -0.26
HDAC6-233ENST00000489352 SRFP11831 508 aa13.43□□□□□ -0.26
HDAC6-233ENST00000489352 SARSP49591 514 aaKnown RBP13.43□□□□□ -0.26
HDAC6-233ENST00000489352 ADAM17P78536 824 aa13.43□□□□□ -0.26
HDAC6-233ENST00000489352 MRPS6P82932 125 aaKnown RBP13.43□□□□□ -0.26
HDAC6-233ENST00000489352 SP2Q02086 613 aa13.43□□□□□ -0.26
HDAC6-233ENST00000489352 POTEGQ6S5H5 508 aa13.43□□□□□ -0.26
HDAC6-233ENST00000489352 PJA1Q8NG27 643 aa13.43□□□□□ -0.26
HDAC6-233ENST00000489352 SHDQ96IW2 340 aa13.43□□□□□ -0.26
HDAC6-233ENST00000489352 ZSCAN32Q9NX65 697 aa13.43□□□□□ -0.26
HDAC6-233ENST00000489352 TNNQ9UQP3 1299 aa13.43□□□□□ -0.26
HDAC6-233ENST00000489352 MRPL11Q9Y3B7 192 aaKnown RBP13.43□□□□□ -0.26
HDAC6-233ENST00000489352 C2orf16Q68DN1 1984 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 NBEAQ8NFP9 2946 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 PATJQ8NI35 1801 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 DENND3A2RUS2 1198 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 CXCL14O95715 111 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 PMLP29590 882 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 GBP2P32456 591 aaPredicted RBP13.42□□□□□ -0.26
HDAC6-233ENST00000489352 NFX1Q12986 1120 aaKnown RBP13.42□□□□□ -0.26
HDAC6-233ENST00000489352 FAM102BQ5T8I3 360 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 DCLRE1AQ6PJP8 1040 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 LRSAM1Q6UWE0 723 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 MAML2Q8IZL2 1156 aaPredicted RBP13.42□□□□□ -0.26
HDAC6-233ENST00000489352 GPR152Q8TDT2 470 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 APPBP2Q92624 585 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 GLG1Q92896 1179 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 OSBP2Q969R2 916 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 ZNF558Q96NG5 402 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 PARD6AQ9NPB6 346 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 ARHGEF3Q9NR81 526 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 TUBE1Q9UJT0 475 aa13.42□□□□□ -0.26
HDAC6-233ENST00000489352 ANP32CO43423 234 aa13.41□□□□□ -0.26
HDAC6-233ENST00000489352 TGM1P22735 817 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms