RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 TUFT1Q9NNX1 390 aa17.72■□□□□ 0.43
SYNE1-227ENST00000489156 BRCA2P51587 3418 aa17.72■□□□□ 0.43
SYNE1-227ENST00000489156 PPP1R3GB7ZBB8 358 aa17.71■□□□□ 0.43
SYNE1-227ENST00000489156 DDX39AO00148 427 aaKnown RBP17.71■□□□□ 0.43
SYNE1-227ENST00000489156 DHX15O43143 795 aaKnown RBP17.71■□□□□ 0.43
SYNE1-227ENST00000489156 PPP1R2P41236 205 aa17.71■□□□□ 0.43
SYNE1-227ENST00000489156 CYFIP1Q7L576 1253 aa17.71■□□□□ 0.43
SYNE1-227ENST00000489156 KCNK18Q7Z418 384 aa17.71■□□□□ 0.43
SYNE1-227ENST00000489156 LENG1Q96BZ8 264 aaPredicted RBP17.71■□□□□ 0.43
SYNE1-227ENST00000489156 HSD17B14Q9BPX1 270 aa17.71■□□□□ 0.43
SYNE1-227ENST00000489156 SENP7Q9BQF6 1050 aa17.71■□□□□ 0.43
SYNE1-227ENST00000489156 BMP2KQ9NSY1 1161 aaPredicted RBP17.71■□□□□ 0.43
SYNE1-227ENST00000489156 TBC1D22BQ9NU19 505 aa17.71■□□□□ 0.43
SYNE1-227ENST00000489156 FAM184BQ9ULE4 1060 aa17.71■□□□□ 0.43
SYNE1-227ENST00000489156 DNM3Q9UQ16 869 aa17.71■□□□□ 0.43
SYNE1-227ENST00000489156 POTEB3A0JP26 581 aa17.71■□□□□ 0.43
SYNE1-227ENST00000489156 GGPS1O95749 300 aa17.71■□□□□ 0.43
SYNE1-227ENST00000489156 MYCP01106 439 aaPredicted RBP17.71■□□□□ 0.43
SYNE1-227ENST00000489156 ASIC1P78348 528 aa17.71■□□□□ 0.43
SYNE1-227ENST00000489156 DUSP28Q4G0W2 176 aa17.71■□□□□ 0.43
SYNE1-227ENST00000489156 POTEBQ6S5H4 581 aa17.71■□□□□ 0.43
SYNE1-227ENST00000489156 GIMAP8Q8ND71 665 aaPredicted RBP17.71■□□□□ 0.43
SYNE1-227ENST00000489156 EIF2AK1Q9BQI3 630 aaKnown RBP17.71■□□□□ 0.43
SYNE1-227ENST00000489156 MYMKA6NI61 221 aa17.7■□□□□ 0.42
SYNE1-227ENST00000489156 EML1O00423 815 aa17.7■□□□□ 0.42
SYNE1-227ENST00000489156 SEPT4O43236 478 aa17.7■□□□□ 0.42
SYNE1-227ENST00000489156 AKR1A1P14550 325 aa17.7■□□□□ 0.42
SYNE1-227ENST00000489156 ZNF75DP51815 510 aa17.7■□□□□ 0.42
SYNE1-227ENST00000489156 NEDD9Q14511 834 aa17.7■□□□□ 0.42
SYNE1-227ENST00000489156 EPHA7Q15375 998 aa17.7■□□□□ 0.42
SYNE1-227ENST00000489156 COBLL1Q53SF7 1204 aa17.7■□□□□ 0.42
SYNE1-227ENST00000489156 UNC13DQ70J99 1090 aa17.7■□□□□ 0.42
SYNE1-227ENST00000489156 NEK9Q8TD19 979 aa17.7■□□□□ 0.42
SYNE1-227ENST00000489156 MRFAP1L1Q96HT8 127 aa17.7■□□□□ 0.42
SYNE1-227ENST00000489156 HSD3B7Q9H2F3 369 aa17.7■□□□□ 0.42
SYNE1-227ENST00000489156 EXOC1Q9NV70 894 aa17.7■□□□□ 0.42
SYNE1-227ENST00000489156 WDR81Q562E7 1941 aa17.7■□□□□ 0.42
SYNE1-227ENST00000489156 PLA2G4BP0C869 781 aa17.69■□□□□ 0.42
SYNE1-227ENST00000489156 CD44P16070 742 aaKnown RBP17.69■□□□□ 0.42
SYNE1-227ENST00000489156 CDC25BP30305 580 aa17.69■□□□□ 0.42
SYNE1-227ENST00000489156 SP4Q02446 784 aa17.69■□□□□ 0.42
SYNE1-227ENST00000489156 STIM1Q13586 685 aa17.69■□□□□ 0.42
SYNE1-227ENST00000489156 DHX8Q14562 1220 aaKnown RBP17.69■□□□□ 0.42
SYNE1-227ENST00000489156 CELF3Q5SZQ8 465 aaKnown RBP17.69■□□□□ 0.42
SYNE1-227ENST00000489156 DHX37Q8IY37 1157 aaKnown RBP17.69■□□□□ 0.42
SYNE1-227ENST00000489156 DDX12PQ92771 950 aa17.69■□□□□ 0.42
SYNE1-227ENST00000489156 MLXIPQ9HAP2 919 aa17.69■□□□□ 0.42
SYNE1-227ENST00000489156 HMX1Q9NP08 348 aaPredicted RBP17.69■□□□□ 0.42
SYNE1-227ENST00000489156 GNEQ9Y223 722 aaKnown RBP17.69■□□□□ 0.42
SYNE1-227ENST00000489156 TELO2Q9Y4R8 837 aa17.69■□□□□ 0.42
SYNE1-227ENST00000489156 NFASCO94856 1347 aa17.69■□□□□ 0.42
SYNE1-227ENST00000489156 FARP2O94887 1054 aaPredicted RBP17.69■□□□□ 0.42
SYNE1-227ENST00000489156 PSMD2Q13200 908 aa17.69■□□□□ 0.42
SYNE1-227ENST00000489156 SPATA1Q5VX52 437 aa17.69■□□□□ 0.42
SYNE1-227ENST00000489156 SYT2Q8N9I0 419 aaPredicted RBP17.69■□□□□ 0.42
SYNE1-227ENST00000489156 RWDD2AQ9UIY3 292 aa17.69■□□□□ 0.42
SYNE1-227ENST00000489156 NFE2L3Q9Y4A8 694 aa17.69■□□□□ 0.42
SYNE1-227ENST00000489156 POTEFA5A3E0 1075 aa17.68■□□□□ 0.42
SYNE1-227ENST00000489156 E9PMD0 336 aa17.68■□□□□ 0.42
SYNE1-227ENST00000489156 CHMP2AO43633 222 aa17.68■□□□□ 0.42
SYNE1-227ENST00000489156 SLITRK3O94933 977 aa17.68■□□□□ 0.42
SYNE1-227ENST00000489156 GH1P01241 217 aa17.68■□□□□ 0.42
SYNE1-227ENST00000489156 PRCPP42785 496 aa17.68■□□□□ 0.42
SYNE1-227ENST00000489156 SLC12A3P55017 1021 aa17.68■□□□□ 0.42
SYNE1-227ENST00000489156 MTFR1Q15390 333 aa17.68■□□□□ 0.42
SYNE1-227ENST00000489156 POTEGQ6S5H5 508 aa17.68■□□□□ 0.42
SYNE1-227ENST00000489156 METTL7BQ6UX53 244 aa17.68■□□□□ 0.42
SYNE1-227ENST00000489156 SMYD4Q8IYR2 804 aaPredicted RBP17.68■□□□□ 0.42
SYNE1-227ENST00000489156 ADSSL1Q8N142 457 aa17.68■□□□□ 0.42
SYNE1-227ENST00000489156 UNC45AQ9H3U1 944 aa17.68■□□□□ 0.42
SYNE1-227ENST00000489156 JPH1Q9HDC5 661 aaPredicted RBP17.68■□□□□ 0.42
SYNE1-227ENST00000489156 FANCLQ9NW38 375 aa17.68■□□□□ 0.42
SYNE1-227ENST00000489156 SLC9A2Q9UBY0 812 aa17.68■□□□□ 0.42
SYNE1-227ENST00000489156 MYH9P35579 1960 aaKnown RBP17.67■□□□□ 0.42
SYNE1-227ENST00000489156 GOLGA6L6A8MZA4 724 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 NKRFO15226 690 aaKnown RBP eCLIP17.67■□□□□ 0.42
SYNE1-227ENST00000489156 DYNC1LI2O43237 492 aaPredicted RBP17.67■□□□□ 0.42
SYNE1-227ENST00000489156 ARHGAP1Q07960 439 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 PAK1Q13153 545 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 MED15Q96RN5 788 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 UNC93B1Q9H1C4 597 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 SYNRGQ9UMZ2 1314 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 PSMA7O14818 248 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 EYA4O95677 639 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 CCNE2O96020 404 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 ZNF18P17022 549 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 IRX5P78411 483 aaPredicted RBP17.67■□□□□ 0.42
SYNE1-227ENST00000489156 HSDL1Q3SXM5 330 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 KLHL10Q6JEL2 608 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 TLK2Q86UE8 772 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 OR6J1Q8NGC5 347 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 DNAJC19Q96DA6 116 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 DHTKD1Q96HY7 919 aaPredicted RBP17.67■□□□□ 0.42
SYNE1-227ENST00000489156 SPATA33Q96N06 139 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 MCOLN1Q9GZU1 580 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 DDX20Q9UHI6 824 aaKnown RBP17.67■□□□□ 0.42
SYNE1-227ENST00000489156 GDAQ9Y2T3 454 aa17.67■□□□□ 0.42
SYNE1-227ENST00000489156 DUSP11O75319 330 aaKnown RBP17.66■□□□□ 0.42
SYNE1-227ENST00000489156 RARBP10826 455 aa17.66■□□□□ 0.42
SYNE1-227ENST00000489156 CYP11B2P19099 503 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms