RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 UPP2O95045 317 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 BAG4O95429 457 aaKnown RBP10.3□□□□□ -0.76
HDAC6-232ENST00000489053 CCNE2O96020 404 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 GCFC2P16383 781 aaKnown RBP10.3□□□□□ -0.76
HDAC6-232ENST00000489053 IBSPP21815 317 aaPredicted RBP10.3□□□□□ -0.76
HDAC6-232ENST00000489053 TMOD1P28289 359 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 FOSBP53539 338 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 DEFB103AP81534 67 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 TMEM62Q0P6H9 643 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 PAK2Q13177 524 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 SKIV2LQ15477 1246 aaKnown RBP10.3□□□□□ -0.76
HDAC6-232ENST00000489053 INF2Q27J81 1249 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 PLEKHG4Q58EX7 1191 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 ODR4Q5SWX8 454 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 PIK3AP1Q6ZUJ8 805 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 MIER3Q7Z3K6 550 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 NEK8Q86SG6 692 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 CCDC60Q8IWA6 550 aaPredicted RBP10.3□□□□□ -0.76
HDAC6-232ENST00000489053 NME8Q8N427 588 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 TRAPPC12Q8WVT3 735 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 BBXQ8WY36 941 aaPredicted RBP10.3□□□□□ -0.76
HDAC6-232ENST00000489053 AIFM3Q96NN9 605 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 PCYT2Q99447 389 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 GABBR1Q9UBS5 961 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 INSL6Q9Y581 213 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 PCDHA2Q9Y5H9 948 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 TRPV2Q9Y5S1 764 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 CDY2AQ9Y6F7 541 aa10.3□□□□□ -0.76
HDAC6-232ENST00000489053 COL1A2P08123 1366 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 SMIM35A0A1B0GVV1 85 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 MBLAC1A4D2B0 266 aaPredicted RBP10.29□□□□□ -0.76
HDAC6-232ENST00000489053 ST18O60284 1047 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 ATG7O95352 703 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 GJB5O95377 273 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 TDP2O95551 362 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 KLRC1P26715 233 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 MBTPS1Q14703 1052 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 CCDC85BQ15834 202 aaPredicted RBP10.29□□□□□ -0.76
HDAC6-232ENST00000489053 ME3Q16798 604 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 Q4G0T1 1027 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 TRAF7Q6Q0C0 670 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 MTHFD1LQ6UB35 978 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 TSHZ1Q6ZSZ6 1077 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 RPAINQ86UA6 219 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.29□□□□□ -0.76
HDAC6-232ENST00000489053 USP38Q8NB14 1042 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 FAM184AQ8NB25 1140 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 CRYGNQ8WXF5 182 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 CCDC43Q96MW1 224 aaKnown RBP10.29□□□□□ -0.76
HDAC6-232ENST00000489053 RNF216Q9NWF9 866 aaPredicted RBP10.29□□□□□ -0.76
HDAC6-232ENST00000489053 MTUS1Q9ULD2 1270 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 LIMCH1Q9UPQ0 1083 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 AKT3Q9Y243 479 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 MYH7BA7E2Y1 1941 aa10.29□□□□□ -0.76
HDAC6-232ENST00000489053 ADAMTS3O15072 1205 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 MAGEB2O15479 319 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 DHX15O43143 795 aaKnown RBP10.28□□□□□ -0.76
HDAC6-232ENST00000489053 DKC1O60832 514 aaKnown RBP eCLIP10.28□□□□□ -0.76
HDAC6-232ENST00000489053 CHRNA1P02708 482 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 OATP04181 439 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 DNM2P50570 870 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 ADAM17P78536 824 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 PRKCEQ02156 737 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 TBC1D8BQ0IIM8 1120 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 FAM26DQ5JW98 314 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 FBXO47Q5MNV8 452 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 MOXD1Q6UVY6 613 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 TMCO2Q7Z6W1 182 aaPredicted RBP10.28□□□□□ -0.76
HDAC6-232ENST00000489053 RDM1Q8NG50 284 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 SLC5A5Q92911 643 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 VWCEQ96DN2 955 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 ZSCAN31Q96LW9 406 aaPredicted RBP10.28□□□□□ -0.76
HDAC6-232ENST00000489053 TGS1Q96RS0 853 aaKnown RBP10.28□□□□□ -0.76
HDAC6-232ENST00000489053 PHF20Q9BVI0 1012 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 FTHL17Q9BXU8 183 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 SEPT9Q9UHD8 586 aaPredicted RBP10.28□□□□□ -0.76
HDAC6-232ENST00000489053 LRFN2Q9ULH4 789 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 KIF3AQ9Y496 699 aa10.28□□□□□ -0.76
HDAC6-232ENST00000489053 TANC1Q9C0D5 1861 aa10.27□□□□□ -0.76
HDAC6-232ENST00000489053 CYP3A7-CYP3A51PA0A087WV96 503 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 IGKV6D-21A0A0A0MT36 114 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 DENND3A2RUS2 1198 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 RPS6KA5O75582 802 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 SEC24BO95487 1268 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 STAG3L1P0CL83 205 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 CYP3A7P24462 503 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 CD52P31358 61 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 NFX1Q12986 1120 aaKnown RBP10.27□□□□□ -0.77
HDAC6-232ENST00000489053 LPIN1Q14693 890 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 GPNMBQ14956 572 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 MARCH8Q5T0T0 291 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.27□□□□□ -0.77
HDAC6-232ENST00000489053 CCDC83Q8IWF9 413 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 SLFN12Q8IYM2 578 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 ZBTB10Q96DT7 871 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 IL17RAQ96F46 866 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 FAM20AQ96MK3 541 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 PPP1R16BQ96T49 567 aa10.27□□□□□ -0.77
HDAC6-232ENST00000489053 CELF4Q9BZC1 486 aaKnown RBP10.27□□□□□ -0.77
HDAC6-232ENST00000489053 UNC45AQ9H3U1 944 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms