RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 RIT2Q99578 217 aa23.12■■□□□ 1.29
HDAC4-209ENST00000487617 WDR64B1ANS9 1081 aa23.11■■□□□ 1.29
HDAC4-209ENST00000487617 RPLP2P05387 115 aaKnown RBP23.11■■□□□ 1.29
HDAC4-209ENST00000487617 MGAT3Q09327 533 aa23.11■■□□□ 1.29
HDAC4-209ENST00000487617 LRCH2Q5VUJ6 765 aa23.11■■□□□ 1.29
HDAC4-209ENST00000487617 MOXD1Q6UVY6 613 aa23.11■■□□□ 1.29
HDAC4-209ENST00000487617 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.11■■□□□ 1.29
HDAC4-209ENST00000487617 SLC17A8Q8NDX2 589 aa23.11■■□□□ 1.29
HDAC4-209ENST00000487617 GJA10Q969M2 543 aa23.11■■□□□ 1.29
HDAC4-209ENST00000487617 GAS2L1Q99501 681 aaPredicted RBP23.11■■□□□ 1.29
HDAC4-209ENST00000487617 TEKT3Q9BXF9 490 aa23.11■■□□□ 1.29
HDAC4-209ENST00000487617 GABBR1Q9UBS5 961 aa23.11■■□□□ 1.29
HDAC4-209ENST00000487617 PCDHA2Q9Y5H9 948 aa23.11■■□□□ 1.29
HDAC4-209ENST00000487617 CDY2AQ9Y6F7 541 aa23.11■■□□□ 1.29
HDAC4-209ENST00000487617 KAT6AQ92794 2004 aa23.1■■□□□ 1.29
HDAC4-209ENST00000487617 CHMP2AO43633 222 aa23.1■■□□□ 1.29
HDAC4-209ENST00000487617 AMHP03971 560 aa23.1■■□□□ 1.29
HDAC4-209ENST00000487617 GHRP10912 638 aa23.1■■□□□ 1.29
HDAC4-209ENST00000487617 ATP4AP20648 1035 aa23.1■■□□□ 1.29
HDAC4-209ENST00000487617 MRPS6P82932 125 aaKnown RBP23.1■■□□□ 1.29
HDAC4-209ENST00000487617 LETM2Q2VYF4 491 aa23.1■■□□□ 1.29
HDAC4-209ENST00000487617 MTHFD1LQ6UB35 978 aa23.1■■□□□ 1.29
HDAC4-209ENST00000487617 TRMT1LQ7Z2T5 733 aaKnown RBP23.1■■□□□ 1.29
HDAC4-209ENST00000487617 OXER1Q8TDS5 423 aa23.1■■□□□ 1.29
HDAC4-209ENST00000487617 IFIH1Q9BYX4 1025 aaKnown RBP23.1■■□□□ 1.29
HDAC4-209ENST00000487617 DISC1Q9NRI5 854 aa23.1■■□□□ 1.29
HDAC4-209ENST00000487617 DDX25Q9UHL0 483 aaKnown RBP23.1■■□□□ 1.29
HDAC4-209ENST00000487617 LIMCH1Q9UPQ0 1083 aa23.1■■□□□ 1.29
HDAC4-209ENST00000487617 MAFBQ9Y5Q3 323 aaPredicted RBP23.1■■□□□ 1.29
HDAC4-209ENST00000487617 JAK2O60674 1132 aa23.09■■□□□ 1.29
HDAC4-209ENST00000487617 KLRC1P26715 233 aa23.09■■□□□ 1.29
HDAC4-209ENST00000487617 ZNF484Q5JVG2 852 aa23.09■■□□□ 1.29
HDAC4-209ENST00000487617 IER5Q5VY09 327 aa23.09■■□□□ 1.29
HDAC4-209ENST00000487617 FAM117BQ6P1L5 589 aa23.09■■□□□ 1.29
HDAC4-209ENST00000487617 PIK3AP1Q6ZUJ8 805 aa23.09■■□□□ 1.29
HDAC4-209ENST00000487617 MYOCDQ8IZQ8 938 aa23.09■■□□□ 1.29
HDAC4-209ENST00000487617 BBXQ8WY36 941 aaPredicted RBP23.09■■□□□ 1.29
HDAC4-209ENST00000487617 APBB2Q92870 758 aa23.09■■□□□ 1.29
HDAC4-209ENST00000487617 MBOAT7Q96N66 472 aa23.09■■□□□ 1.29
HDAC4-209ENST00000487617 UNC45AQ9H3U1 944 aa23.09■■□□□ 1.29
HDAC4-209ENST00000487617 BRMS1Q9HCU9 246 aa23.09■■□□□ 1.29
HDAC4-209ENST00000487617 COL1A2P08123 1366 aa23.09■■□□□ 1.29
HDAC4-209ENST00000487617 SMIM35A0A1B0GVV1 85 aa23.08■■□□□ 1.29
HDAC4-209ENST00000487617 M0QZ92 97 aa23.08■■□□□ 1.29
HDAC4-209ENST00000487617 PSMD10O75832 226 aa23.08■■□□□ 1.29
HDAC4-209ENST00000487617 GJB5O95377 273 aa23.08■■□□□ 1.29
HDAC4-209ENST00000487617 SFNP31947 248 aa23.08■■□□□ 1.29
HDAC4-209ENST00000487617 KRT2P35908 639 aa23.08■■□□□ 1.29
HDAC4-209ENST00000487617 MKRN4PQ13434 485 aaPredicted RBP23.08■■□□□ 1.29
HDAC4-209ENST00000487617 LPIN1Q14693 890 aa23.08■■□□□ 1.29
HDAC4-209ENST00000487617 NEK8Q86SG6 692 aa23.08■■□□□ 1.29
HDAC4-209ENST00000487617 GBF1Q92538 1859 aa23.08■■□□□ 1.29
HDAC4-209ENST00000487617 JAK3P52333 1124 aa23.07■■□□□ 1.28
HDAC4-209ENST00000487617 FOSBP53539 338 aa23.07■■□□□ 1.28
HDAC4-209ENST00000487617 TAP1Q03518 808 aa23.07■■□□□ 1.28
HDAC4-209ENST00000487617 TMEM62Q0P6H9 643 aa23.07■■□□□ 1.28
HDAC4-209ENST00000487617 ST3GAL1Q11201 340 aa23.07■■□□□ 1.28
HDAC4-209ENST00000487617 FBXO47Q5MNV8 452 aa23.07■■□□□ 1.28
HDAC4-209ENST00000487617 ETNPPLQ8TBG4 499 aa23.07■■□□□ 1.28
HDAC4-209ENST00000487617 RAD9AQ99638 391 aa23.07■■□□□ 1.28
HDAC4-209ENST00000487617 KIF2CQ99661 725 aa23.07■■□□□ 1.28
HDAC4-209ENST00000487617 TRPV2Q9Y5S1 764 aa23.07■■□□□ 1.28
HDAC4-209ENST00000487617 IGSF9BQ9UPX0 1349 aa23.07■■□□□ 1.28
HDAC4-209ENST00000487617 LCHNA4D1U4 455 aa23.06■■□□□ 1.28
HDAC4-209ENST00000487617 ZBTB42B2RXF5 422 aa23.06■■□□□ 1.28
HDAC4-209ENST00000487617 SLC37A4O43826 429 aa23.06■■□□□ 1.28
HDAC4-209ENST00000487617 ARHGEF15O94989 841 aa23.06■■□□□ 1.28
HDAC4-209ENST00000487617 GCFC2P16383 781 aaKnown RBP23.06■■□□□ 1.28
HDAC4-209ENST00000487617 TRIM29Q14134 588 aa23.06■■□□□ 1.28
HDAC4-209ENST00000487617 MIER3Q7Z3K6 550 aa23.06■■□□□ 1.28
HDAC4-209ENST00000487617 CCDC83Q8IWF9 413 aa23.06■■□□□ 1.28
HDAC4-209ENST00000487617 NME8Q8N427 588 aa23.06■■□□□ 1.28
HDAC4-209ENST00000487617 FAM167AQ96KS9 214 aa23.06■■□□□ 1.28
HDAC4-209ENST00000487617 CERS4Q9HA82 394 aa23.06■■□□□ 1.28
HDAC4-209ENST00000487617 CCNT1O60563 726 aaKnown RBP23.05■■□□□ 1.28
HDAC4-209ENST00000487617 IGFBP4P22692 258 aa23.05■■□□□ 1.28
HDAC4-209ENST00000487617 NR5A1Q13285 461 aa23.05■■□□□ 1.28
HDAC4-209ENST00000487617 ADGRE1Q14246 886 aa23.05■■□□□ 1.28
HDAC4-209ENST00000487617 EARS2Q5JPH6 523 aaKnown RBP23.05■■□□□ 1.28
HDAC4-209ENST00000487617 PPP4R3AQ6IN85 833 aa23.05■■□□□ 1.28
HDAC4-209ENST00000487617 TSHZ1Q6ZSZ6 1077 aa23.05■■□□□ 1.28
HDAC4-209ENST00000487617 RDM1Q8NG50 284 aa23.05■■□□□ 1.28
HDAC4-209ENST00000487617 NAP1L4Q99733 375 aaKnown RBP23.05■■□□□ 1.28
HDAC4-209ENST00000487617 CELF4Q9BZC1 486 aaKnown RBP23.05■■□□□ 1.28
HDAC4-209ENST00000487617 CEP131Q9UPN4 1083 aa23.05■■□□□ 1.28
HDAC4-209ENST00000487617 COL6A3P12111 3177 aa23.04■■□□□ 1.28
HDAC4-209ENST00000487617 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.04■■□□□ 1.28
HDAC4-209ENST00000487617 ZNF862O60290 1169 aa23.04■■□□□ 1.28
HDAC4-209ENST00000487617 OATP04181 439 aa23.04■■□□□ 1.28
HDAC4-209ENST00000487617 RBM25P49756 843 aaKnown RBP23.04■■□□□ 1.28
HDAC4-209ENST00000487617 PRKCEQ02156 737 aa23.04■■□□□ 1.28
HDAC4-209ENST00000487617 UGCGQ16739 394 aa23.04■■□□□ 1.28
HDAC4-209ENST00000487617 ARNTL2Q8WYA1 636 aa23.04■■□□□ 1.28
HDAC4-209ENST00000487617 ZSCAN31Q96LW9 406 aaPredicted RBP23.04■■□□□ 1.28
HDAC4-209ENST00000487617 NRBP2Q9NSY0 501 aa23.04■■□□□ 1.28
HDAC4-209ENST00000487617 FAM205CA6NFA0 338 aa23.03■■□□□ 1.28
HDAC4-209ENST00000487617 UPP2O95045 317 aa23.03■■□□□ 1.28
HDAC4-209ENST00000487617 C22orf31O95567 290 aa23.03■■□□□ 1.28
HDAC4-209ENST00000487617 MMP1P03956 469 aa23.03■■□□□ 1.28
HDAC4-209ENST00000487617 CD52P31358 61 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 133.2 ms