RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 INO80B-WBP1J3KQ70 363 aa17.7■□□□□ 0.42
COL7A1-210ENST00000487017 MMEP08473 750 aa17.7■□□□□ 0.42
COL7A1-210ENST00000487017 TFAMQ00059 246 aaKnown RBP17.7■□□□□ 0.42
COL7A1-210ENST00000487017 INO80BQ9C086 356 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-210ENST00000487017 DBNDD1Q9H9R9 158 aa17.7■□□□□ 0.42
COL7A1-210ENST00000487017 XPOTO43592 962 aaKnown RBP17.7■□□□□ 0.42
COL7A1-210ENST00000487017 OATP04181 439 aa17.7■□□□□ 0.42
COL7A1-210ENST00000487017 HOXA13P31271 388 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-210ENST00000487017 GSPT2Q8IYD1 628 aaKnown RBP17.7■□□□□ 0.42
COL7A1-210ENST00000487017 TMEM47Q9BQJ4 181 aa17.7■□□□□ 0.42
COL7A1-210ENST00000487017 TRIM56Q9BRZ2 755 aaKnown RBP17.7■□□□□ 0.42
COL7A1-210ENST00000487017 CA4P22748 312 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 EAPPQ56P03 285 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-210ENST00000487017 TTC4O95801 387 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 ORC2Q13416 577 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-210ENST00000487017 RNF207Q6ZRF8 634 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 EXOC8Q8IYI6 725 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 CALR3Q96L12 384 aaKnown RBP17.69■□□□□ 0.42
COL7A1-210ENST00000487017 ELAC2Q9BQ52 826 aaKnown RBP17.69■□□□□ 0.42
COL7A1-210ENST00000487017 SNX24Q9Y343 169 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 SCINQ9Y6U3 715 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 PNPLA6Q8IY17 1366 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 CDHR2Q9BYE9 1310 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 GRID2IPA4D2P6 1211 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 GOLGA8IPA6NC78 632 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 GOLGA8JA6NMD2 632 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 MAPK13O15264 365 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 CYP27B1O15528 508 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 ANKRD20A4Q4UJ75 823 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 ANKRD20A8PQ5CZ79 823 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 ANKRD20A2Q5SQ80 823 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 ANKRD20A1Q5TYW2 823 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 AP1ARQ63HQ0 302 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 FAM196AQ6ZSG2 479 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 SDCCAG3Q96C92 435 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 THEGQ9P2T0 379 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 TSTA3Q13630 321 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-210ENST00000487017 EPS15L1Q9UBC2 864 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 A2ML1A8K2U0 1454 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 TTC26A0AVF1 554 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 COASYQ13057 564 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 PLCB4Q15147 1175 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 BBS9Q3SYG4 887 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 FAM160B2Q86V87 743 aa17.69■□□□□ 0.42
COL7A1-210ENST00000487017 IQANK1A0A1B0GTG1 560 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 SFI1A8K8P3 1242 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 USP17L5A8MUK1 530 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 NR3C1P04150 777 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.68■□□□□ 0.42
COL7A1-210ENST00000487017 PYROXD1Q8WU10 500 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 PSAPP07602 524 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 ARL4AP40617 200 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 NFRKBQ6P4R8 1299 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 SFR1Q86XK3 245 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 CCNYQ8ND76 341 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 DCAF4Q8WV16 495 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 KCNF1Q9H3M0 494 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 DNAJC17Q9NVM6 304 aaKnown RBP17.68■□□□□ 0.42
COL7A1-210ENST00000487017 NXF1Q9UBU9 619 aaKnown RBP17.68■□□□□ 0.42
COL7A1-210ENST00000487017 NRKQ7Z2Y5 1582 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 IPO5O00410 1097 aaKnown RBP17.68■□□□□ 0.42
COL7A1-210ENST00000487017 STX1BP61266 288 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 MTERF2Q49AM1 385 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 TBC1D1Q86TI0 1168 aaPredicted RBP17.68■□□□□ 0.42
COL7A1-210ENST00000487017 SGMS1Q86VZ5 419 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 SLC38A10Q9HBR0 1119 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 SPATS2LQ9NUQ6 558 aaKnown RBP17.68■□□□□ 0.42
COL7A1-210ENST00000487017 WDR91A4D1P6 747 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 TOM1L1O75674 476 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 MMS22LQ6ZRQ5 1243 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 PDIK1LQ8N165 341 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 SKA2Q8WVK7 121 aaPredicted RBP17.68■□□□□ 0.42
COL7A1-210ENST00000487017 FAM149B1Q96BN6 582 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 SPC25Q9HBM1 224 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 AKT3Q9Y243 479 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 UNC13BO14795 1591 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 REREQ9P2R6 1566 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 ARAP3Q8WWN8 1544 aa17.68■□□□□ 0.42
COL7A1-210ENST00000487017 A0A1W2PQC6 194 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 ZBTB5O15062 677 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 MAP3K7O43318 606 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 CD58P19256 250 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 KCNH2Q12809 1159 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 SEMA3FQ13275 785 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 ZNF449Q6P9G9 518 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 CFAP36Q96G28 342 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 HAUS8Q9BT25 410 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 EPC1Q9H2F5 836 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 SCOCQ9UIL1 159 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 CROCC2H7BZ55 1655 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 PRPSAP2O60256 369 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 SKIP12755 728 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 KCTD2Q14681 263 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 GRM4Q14833 912 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 FAM83BQ5T0W9 1011 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 HDAC6Q9UBN7 1215 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 FAF1Q9UNN5 650 aaPredicted RBP17.67■□□□□ 0.42
COL7A1-210ENST00000487017 FOXN1O15353 648 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 SETSIPP0DME0 302 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 CLEC4GQ6UXB4 293 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms