RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 RPUSD2Q8IZ73 545 aaKnown RBP16.63■□□□□ 0.25
USP4-212ENST00000486549 ATP8B4Q8TF62 1192 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 TNPO1Q92973 898 aaKnown RBP16.63■□□□□ 0.25
USP4-212ENST00000486549 MTMR10Q9NXD2 777 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 VAV3Q9UKW4 847 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 NOL7Q9UMY1 257 aaKnown RBP16.63■□□□□ 0.25
USP4-212ENST00000486549 STXBP5LQ9Y2K9 1186 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 MAFBQ9Y5Q3 323 aaPredicted RBP16.63■□□□□ 0.25
USP4-212ENST00000486549 IGSF9BQ9UPX0 1349 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.62■□□□□ 0.25
USP4-212ENST00000486549 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.62■□□□□ 0.25
USP4-212ENST00000486549 RBAK-RBAKDNI3L0D1 243 aa16.62■□□□□ 0.25
USP4-212ENST00000486549 ATP4AP20648 1035 aa16.62■□□□□ 0.25
USP4-212ENST00000486549 ADAM17P78536 824 aa16.62■□□□□ 0.25
USP4-212ENST00000486549 RBL2Q08999 1139 aa16.62■□□□□ 0.25
USP4-212ENST00000486549 ZNF174Q15697 407 aa16.62■□□□□ 0.25
USP4-212ENST00000486549 TTC38Q5R3I4 469 aa16.62■□□□□ 0.25
USP4-212ENST00000486549 MARCH8Q5T0T0 291 aa16.62■□□□□ 0.25
USP4-212ENST00000486549 NCAPH2Q6IBW4 605 aa16.62■□□□□ 0.25
USP4-212ENST00000486549 ZNF365Q70YC5 407 aa16.62■□□□□ 0.25
USP4-212ENST00000486549 SLFN12Q8IYM2 578 aa16.62■□□□□ 0.25
USP4-212ENST00000486549 BANK1Q8NDB2 785 aa16.62■□□□□ 0.25
USP4-212ENST00000486549 RRN3P2A6NIE6 340 aa16.61■□□□□ 0.25
USP4-212ENST00000486549 EML1O00423 815 aa16.61■□□□□ 0.25
USP4-212ENST00000486549 HBP1O60381 514 aa16.61■□□□□ 0.25
USP4-212ENST00000486549 U2AF2P26368 475 aaKnown RBP eCLIP16.61■□□□□ 0.25
USP4-212ENST00000486549 RFC2P35250 354 aa16.61■□□□□ 0.25
USP4-212ENST00000486549 PRKCEQ02156 737 aa16.61■□□□□ 0.25
USP4-212ENST00000486549 PPP2R5CQ13362 524 aa16.61■□□□□ 0.25
USP4-212ENST00000486549 NBR1Q14596 966 aa16.61■□□□□ 0.25
USP4-212ENST00000486549 TMEM240Q5SV17 173 aa16.61■□□□□ 0.25
USP4-212ENST00000486549 B3GNT9Q6UX72 402 aa16.61■□□□□ 0.25
USP4-212ENST00000486549 HSCBQ8IWL3 235 aa16.61■□□□□ 0.25
USP4-212ENST00000486549 RDM1Q8NG50 284 aa16.61■□□□□ 0.25
USP4-212ENST00000486549 BBXQ8WY36 941 aaPredicted RBP16.61■□□□□ 0.25
USP4-212ENST00000486549 FTOQ9C0B1 505 aaKnown RBP eCLIP16.61■□□□□ 0.25
USP4-212ENST00000486549 FAM49AQ9H0Q0 323 aaPredicted RBP16.61■□□□□ 0.25
USP4-212ENST00000486549 TET1Q8NFU7 2136 aa16.61■□□□□ 0.25
USP4-212ENST00000486549 MBLAC1A4D2B0 266 aaPredicted RBP16.6■□□□□ 0.25
USP4-212ENST00000486549 RSPH10B2B2RC85 870 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 ZNF862O60290 1169 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 FGBP02675 491 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 OATP04181 439 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 PFKMP08237 780 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 RSPH10BP0C881 870 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 TXKP42681 527 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 ZNF484Q5JVG2 852 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 TAF2Q6P1X5 1199 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 OTOP2Q7RTS6 562 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 DNAJB3Q8WWF6 145 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 SNX21Q969T3 373 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 FAM167AQ96KS9 214 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 TMEM60Q9H2L4 133 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 EVPLQ92817 2033 aa16.6■□□□□ 0.25
USP4-212ENST00000486549 SIP14410 1827 aa16.59■□□□□ 0.25
USP4-212ENST00000486549 VPS37CA5D8V6 355 aaPredicted RBP16.59■□□□□ 0.25
USP4-212ENST00000486549 TRAPPC10P48553 1259 aa16.59■□□□□ 0.25
USP4-212ENST00000486549 TRAF7Q6Q0C0 670 aa16.59■□□□□ 0.25
USP4-212ENST00000486549 MTHFD1LQ6UB35 978 aa16.59■□□□□ 0.25
USP4-212ENST00000486549 Q7L0L9 218 aa16.59■□□□□ 0.25
USP4-212ENST00000486549 VWCEQ96DN2 955 aa16.59■□□□□ 0.25
USP4-212ENST00000486549 TTC12Q9H892 705 aaPredicted RBP16.59■□□□□ 0.25
USP4-212ENST00000486549 SEPT9Q9UHD8 586 aaPredicted RBP16.59■□□□□ 0.25
USP4-212ENST00000486549 PCDHA12Q9UN75 941 aa16.59■□□□□ 0.25
USP4-212ENST00000486549 COL1A2P08123 1366 aa16.59■□□□□ 0.25
USP4-212ENST00000486549 TMEM150BA6NC51 233 aa16.58■□□□□ 0.24
USP4-212ENST00000486549 ZBBXA8MT70 800 aa16.58■□□□□ 0.24
USP4-212ENST00000486549 ZBTB42B2RXF5 422 aa16.58■□□□□ 0.24
USP4-212ENST00000486549 NBNO60934 754 aa16.58■□□□□ 0.24
USP4-212ENST00000486549 CAND2O75155 1236 aa16.58■□□□□ 0.24
USP4-212ENST00000486549 OR52Z1P0C646 297 aa16.58■□□□□ 0.24
USP4-212ENST00000486549 KLRC1P26715 233 aa16.58■□□□□ 0.24
USP4-212ENST00000486549 TOB1P50616 345 aaPredicted RBP16.58■□□□□ 0.24
USP4-212ENST00000486549 SPIRE1Q08AE8 756 aa16.58■□□□□ 0.24
USP4-212ENST00000486549 MBTPS1Q14703 1052 aa16.58■□□□□ 0.24
USP4-212ENST00000486549 RSPH3Q86UC2 560 aa16.58■□□□□ 0.24
USP4-212ENST00000486549 INTS4Q96HW7 963 aaKnown RBP16.58■□□□□ 0.24
USP4-212ENST00000486549 MTMR9Q96QG7 549 aa16.58■□□□□ 0.24
USP4-212ENST00000486549 NRBP2Q9NSY0 501 aa16.58■□□□□ 0.24
USP4-212ENST00000486549 CEP131Q9UPN4 1083 aa16.58■□□□□ 0.24
USP4-212ENST00000486549 LOXHD1Q8IVV2 1947 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 POTEMA6NI47 508 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 PARNO95453 639 aaKnown RBP16.57■□□□□ 0.24
USP4-212ENST00000486549 ACTN1P12814 892 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 PSMC5P62195 406 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 CYP4A11Q02928 519 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 TMEM62Q0P6H9 643 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 ORC2Q13416 577 aaPredicted RBP16.57■□□□□ 0.24
USP4-212ENST00000486549 GPNMBQ14956 572 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 EPHA7Q15375 998 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 MTERF2Q49AM1 385 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 HERVK_113Q902F9 699 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 DYDC2Q96IM9 177 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 SH2D3AQ9BRG2 576 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 SEMA6BQ9H3T3 888 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 CXXC1Q9P0U4 656 aaPredicted RBP16.57■□□□□ 0.24
USP4-212ENST00000486549 PCDHB6Q9Y5E3 794 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 PCDHA2Q9Y5H9 948 aa16.57■□□□□ 0.24
USP4-212ENST00000486549 SMIM35A0A1B0GVV1 85 aa16.56■□□□□ 0.24
USP4-212ENST00000486549 DDX11L8A8MPP1 907 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms