RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 TSHZ1Q6ZSZ6 1077 aa15.85■□□□□ 0.13
SQSTM1-208ENST00000485412 FANCBQ8NB91 859 aa15.85■□□□□ 0.13
SQSTM1-208ENST00000485412 P2RX5Q93086 422 aa15.85■□□□□ 0.13
SQSTM1-208ENST00000485412 PBXIP1Q96AQ6 731 aa15.85■□□□□ 0.13
SQSTM1-208ENST00000485412 MTA3Q9BTC8 594 aa15.85■□□□□ 0.13
SQSTM1-208ENST00000485412 PLAGL2Q9UPG8 496 aa15.85■□□□□ 0.13
SQSTM1-208ENST00000485412 SLC12A7Q9Y666 1083 aa15.85■□□□□ 0.13
SQSTM1-208ENST00000485412 TMEM221A6NGB7 291 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 SPDYE3A6NKU9 549 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 M0R296 226 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 ADAMTS3O15072 1205 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 DGKIO75912 1065 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 GATMP50440 423 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 PTPN5P54829 565 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 MRPS6P82932 125 aaKnown RBP15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 FUT2Q10981 343 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 ITGB3BPQ13352 177 aaPredicted RBP15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 CAMK1Q14012 370 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 PAN2Q504Q3 1202 aaKnown RBP15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 NAALADL2Q58DX5 795 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 TRIM67Q6ZTA4 783 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 SUGP1Q8IWZ8 645 aaKnown RBP15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 CMTR2Q8IYT2 770 aaKnown RBP15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 PRSS33Q8NF86 280 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 JPH1Q9HDC5 661 aaPredicted RBP15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 KCNH7Q9NS40 1196 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 TMEM260Q9NX78 707 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 BRPF3Q9ULD4 1205 aa15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 MRPL42Q9Y6G3 142 aaKnown RBP15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 MYH9P35579 1960 aaKnown RBP15.84■□□□□ 0.13
SQSTM1-208ENST00000485412 EYA4O95677 639 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 ITGB1P05556 798 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 DNAJB1P25685 340 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 PLCB4Q15147 1175 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 PKN1Q16512 942 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 APOA5Q6Q788 366 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 BMP8AQ7Z5Y6 402 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 ADGRD2Q7Z7M1 963 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 SGMS1Q86VZ5 419 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 CRIPAKQ8N1N5 446 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 EFHBQ8N7U6 833 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 CDHR1Q96JP9 859 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 MSLNLQ96KJ4 702 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 PHOX2BQ99453 314 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 PRRX2Q99811 253 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 MXRA8Q9BRK3 442 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 SMARCAD1Q9H4L7 1026 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 ANO2Q9NQ90 1003 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 SLC9A2Q9UBY0 812 aa15.83■□□□□ 0.12
SQSTM1-208ENST00000485412 KMT2EQ8IZD2 1858 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 M0QZ92 97 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 RPLP2P05387 115 aaKnown RBP15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 STAG3L1P0CL83 205 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 CALM1P0DP23 149 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 CALM2P0DP24 149 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 CALM3P0DP25 149 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 NRIP1P48552 1158 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 ACTR2P61160 394 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 ADCK5Q3MIX3 580 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 RBM23Q86U06 439 aaKnown RBP15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 NPAS4Q8IUM7 802 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 TMTC2Q8N394 836 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 KLHL23Q8NBE8 558 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 SPPL3Q8TCT6 385 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 POF1BQ8WVV4 589 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 FTHL17Q9BXU8 183 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 TMX1Q9H3N1 280 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 TRPC6Q9Y210 931 aa15.82■□□□□ 0.12
SQSTM1-208ENST00000485412 DDX39AO00148 427 aaKnown RBP15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 CCNE2O96020 404 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 IBSPP21815 317 aaPredicted RBP15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 NAPAP54920 295 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 ZXDAP98168 799 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 COASYQ13057 564 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 TMEM266Q2M3C6 531 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 IER5LQ5T953 404 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 IER5Q5VY09 327 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 RASEFQ8IZ41 740 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 SMRP1Q8NCR6 262 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 SNX27Q96L92 541 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 ANO3Q9BYT9 981 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 AGO4Q9HCK5 861 aaKnown RBP15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 FAM217BQ9NTX9 383 aaPredicted RBP15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 CLEC1BQ9P126 229 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 LRFN2Q9ULH4 789 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 PADI3Q9ULW8 664 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 BARX2Q9UMQ3 279 aaPredicted RBP15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 PCDHGC5Q9Y5F6 944 aa15.81■□□□□ 0.12
SQSTM1-208ENST00000485412 IGSF9BQ9UPX0 1349 aa15.8■□□□□ 0.12
SQSTM1-208ENST00000485412 RRN3P2A6NIE6 340 aa15.8■□□□□ 0.12
SQSTM1-208ENST00000485412 LOC730098B7Z3J9 87 aa15.8■□□□□ 0.12
SQSTM1-208ENST00000485412 EXOSC10Q01780 885 aaKnown RBP15.8■□□□□ 0.12
SQSTM1-208ENST00000485412 PAK2Q13177 524 aa15.8■□□□□ 0.12
SQSTM1-208ENST00000485412 FBXL6Q8N531 539 aa15.8■□□□□ 0.12
SQSTM1-208ENST00000485412 CDHR5Q9HBB8 845 aa15.8■□□□□ 0.12
SQSTM1-208ENST00000485412 RIC8AQ9NPQ8 531 aa15.8■□□□□ 0.12
SQSTM1-208ENST00000485412 HCSTQ9UBK5 93 aa15.8■□□□□ 0.12
SQSTM1-208ENST00000485412 USP15Q9Y4E8 981 aaPredicted RBP15.8■□□□□ 0.12
SQSTM1-208ENST00000485412 TRPV2Q9Y5S1 764 aa15.8■□□□□ 0.12
SQSTM1-208ENST00000485412 V9GY48 417 aaPredicted RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms