RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 CCT2P78371 535 aaKnown RBP24.52■■□□□ 1.52
USP40-215ENST00000484528 CCDC60Q8IWA6 550 aaPredicted RBP24.52■■□□□ 1.52
USP40-215ENST00000484528 CCDC12Q8WUD4 166 aaPredicted RBP24.52■■□□□ 1.52
USP40-215ENST00000484528 CRYGNQ8WXF5 182 aa24.52■■□□□ 1.52
USP40-215ENST00000484528 SLC26A6Q9BXS9 759 aa24.52■■□□□ 1.52
USP40-215ENST00000484528 AGXT2Q9BYV1 514 aa24.52■■□□□ 1.52
USP40-215ENST00000484528 TRPV2Q9Y5S1 764 aa24.52■■□□□ 1.52
USP40-215ENST00000484528 IPO5O00410 1097 aaKnown RBP24.51■■□□□ 1.51
USP40-215ENST00000484528 PSMA5P28066 241 aa24.51■■□□□ 1.51
USP40-215ENST00000484528 AKAP17AQ02040 695 aaKnown RBP24.51■■□□□ 1.51
USP40-215ENST00000484528 GPM6BQ13491 265 aa24.51■■□□□ 1.51
USP40-215ENST00000484528 NTRK3Q16288 839 aa24.51■■□□□ 1.51
USP40-215ENST00000484528 ABHD15Q6UXT9 468 aa24.51■■□□□ 1.51
USP40-215ENST00000484528 TMEM192Q8IY95 271 aa24.51■■□□□ 1.51
USP40-215ENST00000484528 LINC01599Q8WXQ3 324 aa24.51■■□□□ 1.51
USP40-215ENST00000484528 IL17RAQ96F46 866 aa24.51■■□□□ 1.51
USP40-215ENST00000484528 SAMD11Q96NU1 681 aa24.51■■□□□ 1.51
USP40-215ENST00000484528 PCDHA2Q9Y5H9 948 aa24.51■■□□□ 1.51
USP40-215ENST00000484528 IGKV6D-21A0A0A0MT36 114 aa24.5■■□□□ 1.51
USP40-215ENST00000484528 M0QZ92 97 aa24.5■■□□□ 1.51
USP40-215ENST00000484528 ENPP3O14638 875 aa24.5■■□□□ 1.51
USP40-215ENST00000484528 DHX15O43143 795 aaKnown RBP24.5■■□□□ 1.51
USP40-215ENST00000484528 CYP3A4P08684 503 aa24.5■■□□□ 1.51
USP40-215ENST00000484528 IER5Q5VY09 327 aa24.5■■□□□ 1.51
USP40-215ENST00000484528 FAM160B1Q5W0V3 765 aa24.5■■□□□ 1.51
USP40-215ENST00000484528 MTHFD1LQ6UB35 978 aa24.5■■□□□ 1.51
USP40-215ENST00000484528 FIBCD1Q8N539 461 aa24.5■■□□□ 1.51
USP40-215ENST00000484528 TNPO1Q92973 898 aaKnown RBP24.5■■□□□ 1.51
USP40-215ENST00000484528 MRPL38Q96DV4 380 aaKnown RBP24.5■■□□□ 1.51
USP40-215ENST00000484528 ZNF577Q9BSK1 485 aa24.5■■□□□ 1.51
USP40-215ENST00000484528 VPS54Q9P1Q0 977 aa24.5■■□□□ 1.51
USP40-215ENST00000484528 CTNNB1P35222 781 aa24.49■■□□□ 1.51
USP40-215ENST00000484528 PDXDC2PQ6P474 469 aa24.49■■□□□ 1.51
USP40-215ENST00000484528 FBXL16Q8N461 479 aa24.49■■□□□ 1.51
USP40-215ENST00000484528 ATP8B4Q8TF62 1192 aa24.49■■□□□ 1.51
USP40-215ENST00000484528 UBE2ZQ9H832 354 aaPredicted RBP24.49■■□□□ 1.51
USP40-215ENST00000484528 ZNF302Q9NR11 478 aa24.49■■□□□ 1.51
USP40-215ENST00000484528 ADGRA3Q8IWK6 1321 aa24.49■■□□□ 1.51
USP40-215ENST00000484528 H3BNC9 293 aa24.48■■□□□ 1.51
USP40-215ENST00000484528 RPLP2P05387 115 aaKnown RBP24.48■■□□□ 1.51
USP40-215ENST00000484528 GNA11P29992 359 aa24.48■■□□□ 1.51
USP40-215ENST00000484528 PDIA3P30101 505 aaKnown RBP24.48■■□□□ 1.51
USP40-215ENST00000484528 SLC26A2P50443 739 aa24.48■■□□□ 1.51
USP40-215ENST00000484528 PRR16Q569H4 304 aa24.48■■□□□ 1.51
USP40-215ENST00000484528 SWSAP1Q6NVH7 229 aa24.48■■□□□ 1.51
USP40-215ENST00000484528 MIS18BP1Q6P0N0 1132 aa24.48■■□□□ 1.51
USP40-215ENST00000484528 TRMT1LQ7Z2T5 733 aaKnown RBP24.48■■□□□ 1.51
USP40-215ENST00000484528 RNF26Q9BY78 433 aaPredicted RBP24.48■■□□□ 1.51
USP40-215ENST00000484528 CELF4Q9BZC1 486 aaKnown RBP24.48■■□□□ 1.51
USP40-215ENST00000484528 RC3H2Q9HBD1 1191 aaKnown RBP24.48■■□□□ 1.51
USP40-215ENST00000484528 PADI3Q9ULW8 664 aa24.48■■□□□ 1.51
USP40-215ENST00000484528 GINS2Q9Y248 185 aa24.48■■□□□ 1.51
USP40-215ENST00000484528 IGSF9BQ9UPX0 1349 aa24.47■■□□□ 1.51
USP40-215ENST00000484528 SMIM35A0A1B0GVV1 85 aa24.47■■□□□ 1.51
USP40-215ENST00000484528 IFNAR1P17181 557 aa24.47■■□□□ 1.51
USP40-215ENST00000484528 IBSPP21815 317 aaPredicted RBP24.47■■□□□ 1.51
USP40-215ENST00000484528 KLRC1P26715 233 aa24.47■■□□□ 1.51
USP40-215ENST00000484528 SETQ01105 290 aaPredicted RBP24.47■■□□□ 1.51
USP40-215ENST00000484528 TOB2Q14106 344 aaPredicted RBP24.47■■□□□ 1.51
USP40-215ENST00000484528 PTPROQ16827 1216 aa24.47■■□□□ 1.51
USP40-215ENST00000484528 TMEM266Q2M3C6 531 aa24.47■■□□□ 1.51
USP40-215ENST00000484528 CCDC148Q8NFR7 591 aa24.47■■□□□ 1.51
USP40-215ENST00000484528 LARP6Q9BRS8 491 aaKnown RBP24.47■■□□□ 1.51
USP40-215ENST00000484528 HBP1O60381 514 aa24.46■■□□□ 1.51
USP40-215ENST00000484528 ATP4AP20648 1035 aa24.46■■□□□ 1.51
USP40-215ENST00000484528 KCNA5P22460 613 aa24.46■■□□□ 1.51
USP40-215ENST00000484528 KRT76Q01546 638 aa24.46■■□□□ 1.51
USP40-215ENST00000484528 PAK2Q13177 524 aa24.46■■□□□ 1.51
USP40-215ENST00000484528 BTG3Q14201 252 aaPredicted RBP24.46■■□□□ 1.51
USP40-215ENST00000484528 MCTP2Q6DN12 878 aa24.46■■□□□ 1.51
USP40-215ENST00000484528 RUFY3Q7L099 469 aa24.46■■□□□ 1.51
USP40-215ENST00000484528 RTN4RL1Q86UN2 441 aaPredicted RBP24.46■■□□□ 1.51
USP40-215ENST00000484528 CKAP2LQ8IYA6 745 aa24.46■■□□□ 1.51
USP40-215ENST00000484528 PPP1R16BQ96T49 567 aa24.46■■□□□ 1.51
USP40-215ENST00000484528 UPF3BQ9BZI7 483 aaKnown RBP24.46■■□□□ 1.51
USP40-215ENST00000484528 TCEAL9Q9UHQ7 104 aa24.46■■□□□ 1.51
USP40-215ENST00000484528 CSPG5O95196 566 aa24.45■■□□□ 1.5
USP40-215ENST00000484528 LINC00271P0C7V0 271 aa24.45■■□□□ 1.5
USP40-215ENST00000484528 TIGD5Q53EQ6 642 aa24.45■■□□□ 1.5
USP40-215ENST00000484528 BICD2Q8TD16 824 aa24.45■■□□□ 1.5
USP40-215ENST00000484528 ZSWIM6Q9HCJ5 1215 aa24.45■■□□□ 1.5
USP40-215ENST00000484528 TBC1D22BQ9NU19 505 aa24.45■■□□□ 1.5
USP40-215ENST00000484528 SQORQ9Y6N5 450 aa24.45■■□□□ 1.5
USP40-215ENST00000484528 COL1A2P08123 1366 aa24.44■■□□□ 1.5
USP40-215ENST00000484528 ZBTB42B2RXF5 422 aa24.44■■□□□ 1.5
USP40-215ENST00000484528 EVCP57679 992 aa24.44■■□□□ 1.5
USP40-215ENST00000484528 TCEAL5Q5H9L2 206 aa24.44■■□□□ 1.5
USP40-215ENST00000484528 ZNF746Q6NUN9 644 aaPredicted RBP24.44■■□□□ 1.5
USP40-215ENST00000484528 BANK1Q8NDB2 785 aa24.44■■□□□ 1.5
USP40-215ENST00000484528 LENG9Q96B70 501 aa24.44■■□□□ 1.5
USP40-215ENST00000484528 FTHL17Q9BXU8 183 aa24.44■■□□□ 1.5
USP40-215ENST00000484528 CDHR5Q9HBB8 845 aa24.44■■□□□ 1.5
USP40-215ENST00000484528 CYP46A1Q9Y6A2 500 aa24.44■■□□□ 1.5
USP40-215ENST00000484528 KDM3AQ9Y4C1 1321 aa24.43■■□□□ 1.5
USP40-215ENST00000484528 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP24.43■■□□□ 1.5
USP40-215ENST00000484528 DGKIO75912 1065 aa24.43■■□□□ 1.5
USP40-215ENST00000484528 BMPR1AP36894 532 aa24.43■■□□□ 1.5
USP40-215ENST00000484528 NFX1Q12986 1120 aaKnown RBP24.43■■□□□ 1.5
USP40-215ENST00000484528 PAN2Q504Q3 1202 aaKnown RBP24.43■■□□□ 1.5
USP40-215ENST00000484528 ZNF484Q5JVG2 852 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms