RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 IL23AQ9NPF7 189 aa17.9■□□□□ 0.46
UPF3A-208ENST00000484246 GABBR1Q9UBS5 961 aa17.9■□□□□ 0.46
UPF3A-208ENST00000484246 TUBE1Q9UJT0 475 aa17.9■□□□□ 0.46
UPF3A-208ENST00000484246 TRPC6Q9Y210 931 aa17.9■□□□□ 0.46
UPF3A-208ENST00000484246 CHMP2AO43633 222 aa17.89■□□□□ 0.45
UPF3A-208ENST00000484246 ZNF862O60290 1169 aa17.89■□□□□ 0.45
UPF3A-208ENST00000484246 ZNF484Q5JVG2 852 aa17.89■□□□□ 0.45
UPF3A-208ENST00000484246 LRRC8DQ7L1W4 858 aa17.89■□□□□ 0.45
UPF3A-208ENST00000484246 TMEM60Q9H2L4 133 aa17.89■□□□□ 0.45
UPF3A-208ENST00000484246 SAMM50Q9Y512 469 aa17.89■□□□□ 0.45
UPF3A-208ENST00000484246 ZBTB42B2RXF5 422 aa17.88■□□□□ 0.45
UPF3A-208ENST00000484246 EML1O00423 815 aa17.88■□□□□ 0.45
UPF3A-208ENST00000484246 OATP04181 439 aa17.88■□□□□ 0.45
UPF3A-208ENST00000484246 MCM7P33993 719 aa17.88■□□□□ 0.45
UPF3A-208ENST00000484246 TOB1P50616 345 aaPredicted RBP17.88■□□□□ 0.45
UPF3A-208ENST00000484246 CCL23P55773 120 aa17.88■□□□□ 0.45
UPF3A-208ENST00000484246 PRKCEQ02156 737 aa17.88■□□□□ 0.45
UPF3A-208ENST00000484246 EPHA7Q15375 998 aa17.88■□□□□ 0.45
UPF3A-208ENST00000484246 UGCGQ16739 394 aa17.88■□□□□ 0.45
UPF3A-208ENST00000484246 RILPL1Q5EBL4 403 aa17.88■□□□□ 0.45
UPF3A-208ENST00000484246 RASIP1Q5U651 963 aa17.88■□□□□ 0.45
UPF3A-208ENST00000484246 CEP131Q9UPN4 1083 aa17.88■□□□□ 0.45
UPF3A-208ENST00000484246 PCDHA2Q9Y5H9 948 aa17.88■□□□□ 0.45
UPF3A-208ENST00000484246 TANC1Q9C0D5 1861 aa17.87■□□□□ 0.45
UPF3A-208ENST00000484246 DKC1O60832 514 aaKnown RBP eCLIP17.87■□□□□ 0.45
UPF3A-208ENST00000484246 CXCL10P02778 98 aa17.87■□□□□ 0.45
UPF3A-208ENST00000484246 OR52Z1P0C646 297 aa17.87■□□□□ 0.45
UPF3A-208ENST00000484246 LRIT3Q3SXY7 679 aa17.87■□□□□ 0.45
UPF3A-208ENST00000484246 FAM26DQ5JW98 314 aa17.87■□□□□ 0.45
UPF3A-208ENST00000484246 TMEM240Q5SV17 173 aa17.87■□□□□ 0.45
UPF3A-208ENST00000484246 C16orf59Q7L2K0 433 aa17.87■□□□□ 0.45
UPF3A-208ENST00000484246 BRAPQ7Z569 592 aa17.87■□□□□ 0.45
UPF3A-208ENST00000484246 RPUSD2Q8IZ73 545 aaKnown RBP17.87■□□□□ 0.45
UPF3A-208ENST00000484246 NEK9Q8TD19 979 aa17.87■□□□□ 0.45
UPF3A-208ENST00000484246 TTC12Q9H892 705 aaPredicted RBP17.87■□□□□ 0.45
UPF3A-208ENST00000484246 PCDHA12Q9UN75 941 aa17.87■□□□□ 0.45
UPF3A-208ENST00000484246 SMIM35A0A1B0GVV1 85 aa17.86■□□□□ 0.45
UPF3A-208ENST00000484246 LAD1O00515 517 aa17.86■□□□□ 0.45
UPF3A-208ENST00000484246 MARCH6O60337 910 aa17.86■□□□□ 0.45
UPF3A-208ENST00000484246 STBD1O95210 358 aa17.86■□□□□ 0.45
UPF3A-208ENST00000484246 P4HBP07237 508 aaKnown RBP17.86■□□□□ 0.45
UPF3A-208ENST00000484246 QARSP47897 775 aaKnown RBP17.86■□□□□ 0.45
UPF3A-208ENST00000484246 PSMC5P62195 406 aa17.86■□□□□ 0.45
UPF3A-208ENST00000484246 GPNMBQ14956 572 aa17.86■□□□□ 0.45
UPF3A-208ENST00000484246 XKR3Q5GH77 459 aa17.86■□□□□ 0.45
UPF3A-208ENST00000484246 C9orf50Q5SZB4 431 aa17.86■□□□□ 0.45
UPF3A-208ENST00000484246 ZNF618Q5T7W0 954 aa17.86■□□□□ 0.45
UPF3A-208ENST00000484246 MCTP1Q6DN14 999 aa17.86■□□□□ 0.45
UPF3A-208ENST00000484246 RUFY4Q6ZNE9 571 aa17.86■□□□□ 0.45
UPF3A-208ENST00000484246 C4orf32Q8N8J7 132 aa17.86■□□□□ 0.45
UPF3A-208ENST00000484246 SCLYQ96I15 445 aa17.86■□□□□ 0.45
UPF3A-208ENST00000484246 NIFKQ9BYG3 293 aaKnown RBP17.86■□□□□ 0.45
UPF3A-208ENST00000484246 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.86■□□□□ 0.45
UPF3A-208ENST00000484246 LYPLA2O95372 231 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 C22orf31O95567 290 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 ATP2B1P20020 1258 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 SYT1P21579 422 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 THPOP40225 353 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 RANBP2P49792 3224 aaKnown RBP17.85■□□□□ 0.45
UPF3A-208ENST00000484246 MBTPS1Q14703 1052 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 SHHQ15465 462 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 TARBP2Q15633 366 aaKnown RBP17.85■□□□□ 0.45
UPF3A-208ENST00000484246 ZNF174Q15697 407 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 MTHFD1LQ6UB35 978 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 RSPH3Q86UC2 560 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 C4orf19Q8IY42 314 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 CKAP2LQ8IYA6 745 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 HERVK_113Q902F9 699 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.85■□□□□ 0.452e-8■■■■■ 40.2
UPF3A-208ENST00000484246 NRBP2Q9NSY0 501 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 PPME1Q9Y570 386 aa17.85■□□□□ 0.45
UPF3A-208ENST00000484246 RSPH10B2B2RC85 870 aa17.84■□□□□ 0.45
UPF3A-208ENST00000484246 MAGEB2O15479 319 aa17.84■□□□□ 0.45
UPF3A-208ENST00000484246 RSPH10BP0C881 870 aa17.84■□□□□ 0.45
UPF3A-208ENST00000484246 PDIA4P13667 645 aaKnown RBP17.84■□□□□ 0.45
UPF3A-208ENST00000484246 PRPHP41219 470 aa17.84■□□□□ 0.45
UPF3A-208ENST00000484246 FXR2P51116 673 aaKnown RBP eCLIP17.84■□□□□ 0.45
UPF3A-208ENST00000484246 IGBP1P78318 339 aa17.84■□□□□ 0.45
UPF3A-208ENST00000484246 MGAT3Q09327 533 aa17.84■□□□□ 0.45
UPF3A-208ENST00000484246 NCAPH2Q6IBW4 605 aa17.84■□□□□ 0.45
UPF3A-208ENST00000484246 LINC01465Q8N7H1 131 aa17.84■□□□□ 0.45
UPF3A-208ENST00000484246 TRAPPC12Q8WVT3 735 aa17.84■□□□□ 0.45
UPF3A-208ENST00000484246 CEP89Q96ST8 783 aa17.84■□□□□ 0.45
UPF3A-208ENST00000484246 HSD17B14Q9BPX1 270 aa17.84■□□□□ 0.45
UPF3A-208ENST00000484246 PCDHB6Q9Y5E3 794 aa17.84■□□□□ 0.45
UPF3A-208ENST00000484246 KDM3AQ9Y4C1 1321 aa17.83■□□□□ 0.44
UPF3A-208ENST00000484246 NBNO60934 754 aa17.83■□□□□ 0.44
UPF3A-208ENST00000484246 KLRC1P26715 233 aa17.83■□□□□ 0.44
UPF3A-208ENST00000484246 TXKP42681 527 aa17.83■□□□□ 0.44
UPF3A-208ENST00000484246 NBR1Q14596 966 aa17.83■□□□□ 0.44
UPF3A-208ENST00000484246 ZNF365Q70YC5 407 aa17.83■□□□□ 0.44
UPF3A-208ENST00000484246 NME8Q8N427 588 aa17.83■□□□□ 0.44
UPF3A-208ENST00000484246 BANK1Q8NDB2 785 aa17.83■□□□□ 0.44
UPF3A-208ENST00000484246 RNPC3Q96LT9 517 aaKnown RBP17.83■□□□□ 0.44
UPF3A-208ENST00000484246 LXNQ9BS40 222 aa17.83■□□□□ 0.44
UPF3A-208ENST00000484246 MTIF3Q9H2K0 278 aaKnown RBP17.83■□□□□ 0.44
UPF3A-208ENST00000484246 ZSWIM4Q9H7M6 989 aa17.83■□□□□ 0.44
UPF3A-208ENST00000484246 MTMR6Q9Y217 621 aa17.83■□□□□ 0.44
UPF3A-208ENST00000484246 VPS37CA5D8V6 355 aaPredicted RBP17.82■□□□□ 0.44
UPF3A-208ENST00000484246 BAIAP3O94812 1187 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms