RNA–Protein interactions for RNA: ENST00000481641.1

CLK1-211, Transcript of CDC like kinase 1, humanhuman

TSL 4

Gene CLK1, Length 690 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-211ENST00000481641 VPS54Q9P1Q0 977 aa21.11■□□□□ 0.97
CLK1-211ENST00000481641 PCDHA2Q9Y5H9 948 aa21.11■□□□□ 0.97
CLK1-211ENST00000481641 LOXHD1Q8IVV2 1947 aa21.11■□□□□ 0.97
CLK1-211ENST00000481641 NCOR1O75376 2440 aa21.1■□□□□ 0.97
CLK1-211ENST00000481641 MTHFD1LQ6UB35 978 aa21.1■□□□□ 0.97
CLK1-211ENST00000481641 TSHZ1Q6ZSZ6 1077 aa21.1■□□□□ 0.97
CLK1-211ENST00000481641 RUFY3Q7L099 469 aa21.1■□□□□ 0.97
CLK1-211ENST00000481641 CCDC12Q8WUD4 166 aaPredicted RBP21.1■□□□□ 0.97
CLK1-211ENST00000481641 HLA-CQ95604 372 aa21.1■□□□□ 0.97
CLK1-211ENST00000481641 ZNF577Q9BSK1 485 aa21.1■□□□□ 0.97
CLK1-211ENST00000481641 COG5Q9UP83 839 aa21.1■□□□□ 0.97
CLK1-211ENST00000481641 IPO5O00410 1097 aaKnown RBP21.09■□□□□ 0.97
CLK1-211ENST00000481641 IFNAR1P17181 557 aa21.09■□□□□ 0.97
CLK1-211ENST00000481641 EVCP57679 992 aa21.09■□□□□ 0.97
CLK1-211ENST00000481641 IER5Q5VY09 327 aa21.09■□□□□ 0.97
CLK1-211ENST00000481641 SWSAP1Q6NVH7 229 aa21.09■□□□□ 0.97
CLK1-211ENST00000481641 TMEM192Q8IY95 271 aa21.09■□□□□ 0.97
CLK1-211ENST00000481641 LINC01599Q8WXQ3 324 aa21.09■□□□□ 0.97
CLK1-211ENST00000481641 RNF26Q9BY78 433 aaPredicted RBP21.09■□□□□ 0.97
CLK1-211ENST00000481641 ZSWIM6Q9HCJ5 1215 aa21.09■□□□□ 0.97
CLK1-211ENST00000481641 ZNF302Q9NR11 478 aa21.09■□□□□ 0.97
CLK1-211ENST00000481641 TRPV2Q9Y5S1 764 aa21.09■□□□□ 0.97
CLK1-211ENST00000481641 NLRC5Q86WI3 1866 aa21.09■□□□□ 0.97
CLK1-211ENST00000481641 EDIL3O43854 480 aa21.08■□□□□ 0.97
CLK1-211ENST00000481641 ATP4AP20648 1035 aa21.08■□□□□ 0.97
CLK1-211ENST00000481641 KLRC1P26715 233 aa21.08■□□□□ 0.97
CLK1-211ENST00000481641 GNA11P29992 359 aa21.08■□□□□ 0.97
CLK1-211ENST00000481641 AAK1Q2M2I8 961 aa21.08■□□□□ 0.97
CLK1-211ENST00000481641 PRR16Q569H4 304 aa21.08■□□□□ 0.97
CLK1-211ENST00000481641 FAM160B1Q5W0V3 765 aa21.08■□□□□ 0.97
CLK1-211ENST00000481641 PDXDC2PQ6P474 469 aa21.08■□□□□ 0.97
CLK1-211ENST00000481641 TRMT1LQ7Z2T5 733 aaKnown RBP21.08■□□□□ 0.97
CLK1-211ENST00000481641 RTN4RL1Q86UN2 441 aaPredicted RBP21.08■□□□□ 0.97
CLK1-211ENST00000481641 TNPO1Q92973 898 aaKnown RBP21.08■□□□□ 0.97
CLK1-211ENST00000481641 IL17RAQ96F46 866 aa21.08■□□□□ 0.97
CLK1-211ENST00000481641 HBP1O60381 514 aa21.07■□□□□ 0.96
CLK1-211ENST00000481641 GPM6BQ13491 265 aa21.07■□□□□ 0.96
CLK1-211ENST00000481641 MIS18BP1Q6P0N0 1132 aa21.07■□□□□ 0.96
CLK1-211ENST00000481641 ATP8B4Q8TF62 1192 aa21.07■□□□□ 0.96
CLK1-211ENST00000481641 CELF4Q9BZC1 486 aaKnown RBP21.07■□□□□ 0.96
CLK1-211ENST00000481641 UPF3BQ9BZI7 483 aaKnown RBP21.07■□□□□ 0.96
CLK1-211ENST00000481641 CYP46A1Q9Y6A2 500 aa21.07■□□□□ 0.96
CLK1-211ENST00000481641 TTC3P53804 2025 aa21.07■□□□□ 0.96
CLK1-211ENST00000481641 EVPLQ92817 2033 aa21.07■□□□□ 0.96
CLK1-211ENST00000481641 SMIM35A0A1B0GVV1 85 aa21.06■□□□□ 0.96
CLK1-211ENST00000481641 M0QZ92 97 aa21.06■□□□□ 0.96
CLK1-211ENST00000481641 SLC26A2P50443 739 aa21.06■□□□□ 0.96
CLK1-211ENST00000481641 STK3Q13188 491 aa21.06■□□□□ 0.96
CLK1-211ENST00000481641 TMEM266Q2M3C6 531 aa21.06■□□□□ 0.96
CLK1-211ENST00000481641 MCTP2Q6DN12 878 aa21.06■□□□□ 0.96
CLK1-211ENST00000481641 FIBCD1Q8N539 461 aa21.06■□□□□ 0.96
CLK1-211ENST00000481641 CCDC148Q8NFR7 591 aa21.06■□□□□ 0.96
CLK1-211ENST00000481641 LENG9Q96B70 501 aa21.06■□□□□ 0.96
CLK1-211ENST00000481641 SAMD11Q96NU1 681 aa21.06■□□□□ 0.96
CLK1-211ENST00000481641 CDHR5Q9HBB8 845 aa21.06■□□□□ 0.96
CLK1-211ENST00000481641 PADI3Q9ULW8 664 aa21.06■□□□□ 0.96
CLK1-211ENST00000481641 MYO7AQ13402 2215 aa21.06■□□□□ 0.96
CLK1-211ENST00000481641 BDP1A6H8Y1 2624 aa21.06■□□□□ 0.96
CLK1-211ENST00000481641 ZBTB42B2RXF5 422 aa21.05■□□□□ 0.96
CLK1-211ENST00000481641 H3BNC9 293 aa21.05■□□□□ 0.96
CLK1-211ENST00000481641 LINC00271P0C7V0 271 aa21.05■□□□□ 0.96
CLK1-211ENST00000481641 CIITAP33076 1130 aa21.05■□□□□ 0.96
CLK1-211ENST00000481641 NLRP5P59047 1200 aa21.05■□□□□ 0.96
CLK1-211ENST00000481641 SETQ01105 290 aaPredicted RBP21.05■□□□□ 0.96
CLK1-211ENST00000481641 KRT76Q01546 638 aa21.05■□□□□ 0.96
CLK1-211ENST00000481641 CKAP2LQ8IYA6 745 aa21.05■□□□□ 0.96
CLK1-211ENST00000481641 BICD2Q8TD16 824 aa21.05■□□□□ 0.96
CLK1-211ENST00000481641 MRPL38Q96DV4 380 aaKnown RBP21.05■□□□□ 0.96
CLK1-211ENST00000481641 PPP1R16BQ96T49 567 aa21.05■□□□□ 0.96
CLK1-211ENST00000481641 RC3H2Q9HBD1 1191 aaKnown RBP21.05■□□□□ 0.96
CLK1-211ENST00000481641 TBC1D22BQ9NU19 505 aa21.05■□□□□ 0.96
CLK1-211ENST00000481641 GINS2Q9Y248 185 aa21.05■□□□□ 0.96
CLK1-211ENST00000481641 MYH9P35579 1960 aaKnown RBP21.05■□□□□ 0.96
CLK1-211ENST00000481641 IGSF9BQ9UPX0 1349 aa21.04■□□□□ 0.96
CLK1-211ENST00000481641 RPLP2P05387 115 aaKnown RBP21.04■□□□□ 0.96
CLK1-211ENST00000481641 IBSPP21815 317 aaPredicted RBP21.04■□□□□ 0.96
CLK1-211ENST00000481641 CTNNB1P35222 781 aa21.04■□□□□ 0.96
CLK1-211ENST00000481641 SSRP1Q08945 709 aaKnown RBP21.04■□□□□ 0.96
CLK1-211ENST00000481641 PAK2Q13177 524 aa21.04■□□□□ 0.96
CLK1-211ENST00000481641 ZNF746Q6NUN9 644 aaPredicted RBP21.04■□□□□ 0.96
CLK1-211ENST00000481641 KIAA0319LQ8IZA0 1049 aa21.04■□□□□ 0.96
CLK1-211ENST00000481641 NME8Q8N427 588 aa21.04■□□□□ 0.96
CLK1-211ENST00000481641 GJA10Q969M2 543 aa21.04■□□□□ 0.96
CLK1-211ENST00000481641 GABBR1Q9UBS5 961 aa21.04■□□□□ 0.96
CLK1-211ENST00000481641 COL4A6Q14031 1691 aa21.04■□□□□ 0.96
CLK1-211ENST00000481641 ADGRA3Q8IWK6 1321 aa21.04■□□□□ 0.96
CLK1-211ENST00000481641 RALGAPA2Q2PPJ7 1873 aa21.03■□□□□ 0.96
CLK1-211ENST00000481641 EPB41L2O43491 1005 aaKnown RBP21.03■□□□□ 0.96
CLK1-211ENST00000481641 DTNBO60941 627 aa21.03■□□□□ 0.96
CLK1-211ENST00000481641 NEFLP07196 543 aa21.03■□□□□ 0.96
CLK1-211ENST00000481641 ZNF484Q5JVG2 852 aa21.03■□□□□ 0.96
CLK1-211ENST00000481641 ZNF689Q96CS4 500 aaPredicted RBP21.03■□□□□ 0.96
CLK1-211ENST00000481641 AIFM3Q96NN9 605 aa21.03■□□□□ 0.96
CLK1-211ENST00000481641 TMX1Q9H3N1 280 aa21.03■□□□□ 0.96
CLK1-211ENST00000481641 UBE2ZQ9H832 354 aaPredicted RBP21.03■□□□□ 0.96
CLK1-211ENST00000481641 SH3GLB2Q9NR46 395 aa21.03■□□□□ 0.96
CLK1-211ENST00000481641 PCDHA10Q9Y5I2 948 aa21.03■□□□□ 0.96
CLK1-211ENST00000481641 MAFBQ9Y5Q3 323 aaPredicted RBP21.03■□□□□ 0.96
CLK1-211ENST00000481641 SQORQ9Y6N5 450 aa21.03■□□□□ 0.96
CLK1-211ENST00000481641 KDM3AQ9Y4C1 1321 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms