RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 FAM102BQ5T8I3 360 aa13.74□□□□□ -0.21
HDAC6-219ENST00000476625 TYW1BQ6NUM6 668 aa13.74□□□□□ -0.21
HDAC6-219ENST00000476625 EFHBQ8N7U6 833 aa13.74□□□□□ -0.21
HDAC6-219ENST00000476625 SMRP1Q8NCR6 262 aa13.74□□□□□ -0.21
HDAC6-219ENST00000476625 TMEM40Q8WWA1 233 aa13.74□□□□□ -0.21
HDAC6-219ENST00000476625 RPGRIP1Q96KN7 1286 aa13.74□□□□□ -0.21
HDAC6-219ENST00000476625 YTHDC1Q96MU7 727 aaKnown RBP13.74□□□□□ -0.21
HDAC6-219ENST00000476625 UPF3BQ9BZI7 483 aaKnown RBP13.74□□□□□ -0.21
HDAC6-219ENST00000476625 PCDHA6Q9UN73 950 aa13.74□□□□□ -0.21
HDAC6-219ENST00000476625 GINS2Q9Y248 185 aa13.74□□□□□ -0.21
HDAC6-219ENST00000476625 RWDD3Q9Y3V2 267 aa13.74□□□□□ -0.21
HDAC6-219ENST00000476625 PCDHA8Q9Y5H6 950 aa13.74□□□□□ -0.21
HDAC6-219ENST00000476625 U3KPZ7 1027 aaPredicted RBP13.74□□□□□ -0.21
HDAC6-219ENST00000476625 IGSF9BQ9UPX0 1349 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 DDX39AO00148 427 aaKnown RBP13.73□□□□□ -0.21
HDAC6-219ENST00000476625 ADAMTS3O15072 1205 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 PRC1O43663 620 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 EYA4O95677 639 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 SCG2P13521 617 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 ERVFC1P60507 584 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 ZXDAP98168 799 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 PAK2Q13177 524 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 ITGB3BPQ13352 177 aaPredicted RBP13.73□□□□□ -0.21
HDAC6-219ENST00000476625 TRIM67Q6ZTA4 783 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 RSPH3Q86UC2 560 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 NPAS4Q8IUM7 802 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 CTCFLQ8NI51 663 aaPredicted RBP13.73□□□□□ -0.21
HDAC6-219ENST00000476625 FEZF2Q8TBJ5 459 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 P2RX5Q93086 422 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 PBXIP1Q96AQ6 731 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 PLVAPQ9BX97 442 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 SMOC2Q9H3U7 446 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 SMARCAD1Q9H4L7 1026 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 PSTPIP2Q9H939 334 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 JADE2Q9NQC1 790 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 TMEM260Q9NX78 707 aa13.73□□□□□ -0.21
HDAC6-219ENST00000476625 SEC63Q9UGP8 760 aaKnown RBP13.73□□□□□ -0.21
HDAC6-219ENST00000476625 RBM8AQ9Y5S9 174 aaKnown RBP13.73□□□□□ -0.21
HDAC6-219ENST00000476625 SH2B2O14492 632 aaPredicted RBP13.72□□□□□ -0.21
HDAC6-219ENST00000476625 SGSM2O43147 1006 aa13.72□□□□□ -0.21
HDAC6-219ENST00000476625 NCK2O43639 380 aa13.72□□□□□ -0.21
HDAC6-219ENST00000476625 DDAH1O94760 285 aa13.72□□□□□ -0.21
HDAC6-219ENST00000476625 FGFR1P11362 822 aa13.72□□□□□ -0.21
HDAC6-219ENST00000476625 PBX3P40426 434 aa13.72□□□□□ -0.21
HDAC6-219ENST00000476625 ACTR2P61160 394 aa13.72□□□□□ -0.21
HDAC6-219ENST00000476625 NFX1Q12986 1120 aaKnown RBP13.72□□□□□ -0.21
HDAC6-219ENST00000476625 TRAF1Q13077 416 aa13.72□□□□□ -0.21
HDAC6-219ENST00000476625 LLGL2Q6P1M3 1020 aa13.72□□□□□ -0.21
HDAC6-219ENST00000476625 NFXL1Q6ZNB6 911 aa13.72□□□□□ -0.21
HDAC6-219ENST00000476625 HEATR3Q7Z4Q2 680 aa13.72□□□□□ -0.21
HDAC6-219ENST00000476625 MFSD14AQ96MC6 490 aa13.72□□□□□ -0.21
HDAC6-219ENST00000476625 POP1Q99575 1024 aaKnown RBP13.72□□□□□ -0.21
HDAC6-219ENST00000476625 CELF4Q9BZC1 486 aaKnown RBP13.72□□□□□ -0.21
HDAC6-219ENST00000476625 ERVK-5Q9HDB9 667 aa13.72□□□□□ -0.21
HDAC6-219ENST00000476625 JPH1Q9HDC5 661 aaPredicted RBP13.72□□□□□ -0.21
HDAC6-219ENST00000476625 SLC9A2Q9UBY0 812 aa13.72□□□□□ -0.21
HDAC6-219ENST00000476625 NOC2LQ9Y3T9 749 aaKnown RBP13.72□□□□□ -0.21
HDAC6-219ENST00000476625 TBKBP1A7MCY6 615 aa13.71□□□□□ -0.21
HDAC6-219ENST00000476625 CCNE2O96020 404 aa13.71□□□□□ -0.21
HDAC6-219ENST00000476625 COASYQ13057 564 aa13.71□□□□□ -0.21
HDAC6-219ENST00000476625 SART3Q15020 963 aaKnown RBP13.71□□□□□ -0.21
HDAC6-219ENST00000476625 SPOUT1Q5T280 376 aaKnown RBP13.71□□□□□ -0.21
HDAC6-219ENST00000476625 PLPP4Q5VZY2 271 aa13.71□□□□□ -0.21
HDAC6-219ENST00000476625 WWC2Q6AWC2 1192 aa13.71□□□□□ -0.21
HDAC6-219ENST00000476625 XRRA1Q6P2D8 792 aa13.71□□□□□ -0.21
HDAC6-219ENST00000476625 MTHFD1LQ6UB35 978 aa13.71□□□□□ -0.21
HDAC6-219ENST00000476625 TRMT1LQ7Z2T5 733 aaKnown RBP13.71□□□□□ -0.21
HDAC6-219ENST00000476625 GIMAP8Q8ND71 665 aaPredicted RBP13.71□□□□□ -0.21
HDAC6-219ENST00000476625 TLE6Q9H808 572 aa13.71□□□□□ -0.21
HDAC6-219ENST00000476625 KCNH7Q9NS40 1196 aa13.71□□□□□ -0.21
HDAC6-219ENST00000476625 LRFN2Q9ULH4 789 aa13.71□□□□□ -0.21
HDAC6-219ENST00000476625 PCDHA2Q9Y5H9 948 aa13.71□□□□□ -0.21
HDAC6-219ENST00000476625 KRT76Q01546 638 aa13.7□□□□□ -0.22
HDAC6-219ENST00000476625 IER5Q5VY09 327 aa13.7□□□□□ -0.22
HDAC6-219ENST00000476625 MICAL1Q8TDZ2 1067 aa13.7□□□□□ -0.22
HDAC6-219ENST00000476625 MAP4K1Q92918 833 aa13.7□□□□□ -0.22
HDAC6-219ENST00000476625 ASIC4Q96FT7 647 aa13.7□□□□□ -0.22
HDAC6-219ENST00000476625 ZNF668Q96K58 619 aaPredicted RBP13.7□□□□□ -0.22
HDAC6-219ENST00000476625 TCEANC2Q96MN5 208 aa13.7□□□□□ -0.22
HDAC6-219ENST00000476625 ADAM2Q99965 735 aa13.7□□□□□ -0.22
HDAC6-219ENST00000476625 MXRA8Q9BRK3 442 aa13.7□□□□□ -0.22
HDAC6-219ENST00000476625 KCNH6Q9H252 994 aa13.7□□□□□ -0.22
HDAC6-219ENST00000476625 CNTNAP5Q8WYK1 1306 aa13.69□□□□□ -0.22
HDAC6-219ENST00000476625 MYH9P35579 1960 aaKnown RBP13.69□□□□□ -0.22
HDAC6-219ENST00000476625 CCDC69A6NI79 296 aa13.69□□□□□ -0.22
HDAC6-219ENST00000476625 RRN3P2A6NIE6 340 aa13.69□□□□□ -0.22
HDAC6-219ENST00000476625 SPDYE3A6NKU9 549 aa13.69□□□□□ -0.22
HDAC6-219ENST00000476625 HIDE1A8MVS5 230 aa13.69□□□□□ -0.22
HDAC6-219ENST00000476625 M0QZ92 97 aa13.69□□□□□ -0.22
HDAC6-219ENST00000476625 FGF18O76093 207 aa13.69□□□□□ -0.22
HDAC6-219ENST00000476625 ATP4AP20648 1035 aa13.69□□□□□ -0.22
HDAC6-219ENST00000476625 KLRC1P26715 233 aa13.69□□□□□ -0.22
HDAC6-219ENST00000476625 KIF5BP33176 963 aa13.69□□□□□ -0.22
HDAC6-219ENST00000476625 SARSP49591 514 aaKnown RBP13.69□□□□□ -0.22
HDAC6-219ENST00000476625 IRX6P78412 446 aaPredicted RBP13.69□□□□□ -0.22
HDAC6-219ENST00000476625 CBX2Q14781 532 aaPredicted RBP13.69□□□□□ -0.22
HDAC6-219ENST00000476625 DUSP6Q16828 381 aa13.69□□□□□ -0.22
HDAC6-219ENST00000476625 LRRC55Q6ZSA7 311 aa13.69□□□□□ -0.22
HDAC6-219ENST00000476625 TMTC3Q6ZXV5 915 aa13.69□□□□□ -0.22
HDAC6-219ENST00000476625 MICU3Q86XE3 530 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms