RNA–Protein interactions for RNA: ENST00000474258.1

SEMA4D-216, Transcript of semaphorin 4D, humanhuman

TSL 4

Gene SEMA4D, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-216ENST00000474258 GPM6BQ13491 265 aa12.59□□□□□ -0.39
SEMA4D-216ENST00000474258 JAKMIP3Q5VZ66 844 aa12.59□□□□□ -0.39
SEMA4D-216ENST00000474258 FAM160B1Q5W0V3 765 aa12.59□□□□□ -0.39
SEMA4D-216ENST00000474258 POTEBQ6S5H4 581 aa12.59□□□□□ -0.39
SEMA4D-216ENST00000474258 PLA2G4DQ86XP0 818 aa12.59□□□□□ -0.39
SEMA4D-216ENST00000474258 NME8Q8N427 588 aa12.59□□□□□ -0.39
SEMA4D-216ENST00000474258 FBXL16Q8N461 479 aa12.59□□□□□ -0.39
SEMA4D-216ENST00000474258 BRF1Q92994 677 aa12.59□□□□□ -0.39
SEMA4D-216ENST00000474258 ZMYND12Q9H0C1 365 aa12.59□□□□□ -0.39
SEMA4D-216ENST00000474258 UBE2ZQ9H832 354 aaPredicted RBP12.59□□□□□ -0.39
SEMA4D-216ENST00000474258 C6orf50Q9HD87 102 aa12.59□□□□□ -0.39
SEMA4D-216ENST00000474258 RWDD3Q9Y3V2 267 aa12.59□□□□□ -0.39
SEMA4D-216ENST00000474258 SNX14Q9Y5W7 946 aa12.59□□□□□ -0.39
SEMA4D-216ENST00000474258 FNDC1Q4ZHG4 1894 aaPredicted RBP12.59□□□□□ -0.39
SEMA4D-216ENST00000474258 SMIM35A0A1B0GVV1 85 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 FAM86B1E9PN63 330 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 DDX39AO00148 427 aaKnown RBP12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 BACH1O14867 736 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 PRPF3O43395 683 aaKnown RBP12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 HBP1O60381 514 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 RB1P06400 928 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 FAM86B2P0C5J1 330 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 PSMA5P28066 241 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 GNA11P29992 359 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 AKAP17AQ02040 695 aaKnown RBP12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 LEXMQ3ZCV2 418 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 TIGD5Q53EQ6 642 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 MIS18BP1Q6P0N0 1132 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 MTHFD1LQ6UB35 978 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 ABHD15Q6UXT9 468 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 TRAPPC12Q8WVT3 735 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 ZBTB10Q96DT7 871 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 FTHL17Q9BXU8 183 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 CELF4Q9BZC1 486 aaKnown RBP12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 AGO3Q9H9G7 860 aaKnown RBP12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 TRPV2Q9Y5S1 764 aa12.58□□□□□ -0.4
SEMA4D-216ENST00000474258 NID2Q14112 1375 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 IGLV3-22A0A075B6J6 115 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 C5orf67F2Z3F1 127 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 IPO5O00410 1097 aaKnown RBP12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 DHX15O43143 795 aaKnown RBP12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 REC8O95072 547 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 CCNE2O96020 404 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 RPS6KB1P23443 525 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 KLRC1P26715 233 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 CD52P31358 61 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 CTNNB1P35222 781 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 BMPR1AP36894 532 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 SETQ01105 290 aaPredicted RBP12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 TMEM62Q0P6H9 643 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 PKN1Q16512 942 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 REXO1Q8N1G1 1221 aaKnown RBP12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 BANK1Q8NDB2 785 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 CRYGNQ8WXF5 182 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 ZNF689Q96CS4 500 aaPredicted RBP12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 AGXT2Q9BYV1 514 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 RC3H2Q9HBD1 1191 aaKnown RBP12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 ZNF302Q9NR11 478 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 TBC1D22BQ9NU19 505 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 PADI3Q9ULW8 664 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 ADGRA3Q8IWK6 1321 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 IGSF9BQ9UPX0 1349 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 KDM3AQ9Y4C1 1321 aa12.57□□□□□ -0.4
SEMA4D-216ENST00000474258 COL1A2P08123 1366 aa12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 EPB41L2O43491 1005 aaKnown RBP12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 DGKIO75912 1065 aa12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 COL9A1P20849 921 aa12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 KCNA5P22460 613 aa12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 KRT76Q01546 638 aa12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 PAK2Q13177 524 aa12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 BTG3Q14201 252 aaPredicted RBP12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 ZNF484Q5JVG2 852 aa12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 SWSAP1Q6NVH7 229 aa12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 PDXDC2PQ6P474 469 aa12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 FAM43BQ6ZT52 329 aaPredicted RBP12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 RTN4RL1Q86UN2 441 aaPredicted RBP12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 BICD2Q8TD16 824 aa12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 ATP8B4Q8TF62 1192 aa12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 CLP1Q92989 425 aaKnown RBP12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 ZNF577Q9BSK1 485 aa12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 C11orf84Q9BUA3 381 aaPredicted RBP12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 C1QTNF1Q9BXJ1 281 aa12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 RNF26Q9BY78 433 aaPredicted RBP12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 LMAN2LQ9H0V9 348 aa12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 NSUN3Q9H649 340 aaKnown RBP12.56□□□□□ -0.4
SEMA4D-216ENST00000474258 LINC00271P0C7V0 271 aa12.55□□□□□ -0.4
SEMA4D-216ENST00000474258 STAG3L1P0CL83 205 aa12.55□□□□□ -0.4
SEMA4D-216ENST00000474258 NTRK3Q16288 839 aa12.55□□□□□ -0.4
SEMA4D-216ENST00000474258 PUS10Q3MIT2 529 aaKnown RBP12.55□□□□□ -0.4
SEMA4D-216ENST00000474258 TCEAL5Q5H9L2 206 aa12.55□□□□□ -0.4
SEMA4D-216ENST00000474258 ODR4Q5SWX8 454 aa12.55□□□□□ -0.4
SEMA4D-216ENST00000474258 ZNF746Q6NUN9 644 aaPredicted RBP12.55□□□□□ -0.4
SEMA4D-216ENST00000474258 NPAS4Q8IUM7 802 aa12.55□□□□□ -0.4
SEMA4D-216ENST00000474258 CCDC60Q8IWA6 550 aaPredicted RBP12.55□□□□□ -0.4
SEMA4D-216ENST00000474258 CKAP2LQ8IYA6 745 aa12.55□□□□□ -0.4
SEMA4D-216ENST00000474258 SMAP1Q8IYB5 467 aaPredicted RBP12.55□□□□□ -0.4
SEMA4D-216ENST00000474258 CCDC148Q8NFR7 591 aa12.55□□□□□ -0.4
SEMA4D-216ENST00000474258 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.55□□□□□ -0.4
SEMA4D-216ENST00000474258 NEK9Q8TD19 979 aa12.55□□□□□ -0.4
SEMA4D-216ENST00000474258 LINC01599Q8WXQ3 324 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms