RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 TMEM192Q8IY95 271 aa9.22□□□□□ -0.93
USP48-207ENST00000471752 KIAA0319LQ8IZA0 1049 aa9.22□□□□□ -0.93
USP48-207ENST00000471752 FBXO22Q8NEZ5 403 aa9.22□□□□□ -0.93
USP48-207ENST00000471752 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.22□□□□□ -0.93
USP48-207ENST00000471752 TMEM40Q8WWA1 233 aa9.22□□□□□ -0.93
USP48-207ENST00000471752 SYMPKQ92797 1274 aaKnown RBP9.22□□□□□ -0.93
USP48-207ENST00000471752 HLA-CQ95604 372 aa9.22□□□□□ -0.93
USP48-207ENST00000471752 LENG9Q96B70 501 aa9.22□□□□□ -0.93
USP48-207ENST00000471752 DCBLD2Q96PD2 775 aa9.22□□□□□ -0.93
USP48-207ENST00000471752 SMARCAD1Q9H4L7 1026 aa9.22□□□□□ -0.93
USP48-207ENST00000471752 RC3H2Q9HBD1 1191 aaKnown RBP9.22□□□□□ -0.93
USP48-207ENST00000471752 GJB4Q9NTQ9 266 aa9.22□□□□□ -0.93
USP48-207ENST00000471752 RBM28Q9NW13 759 aaKnown RBP9.22□□□□□ -0.93
USP48-207ENST00000471752 ERAP1Q9NZ08 941 aa9.22□□□□□ -0.93
USP48-207ENST00000471752 VPS54Q9P1Q0 977 aa9.22□□□□□ -0.93
USP48-207ENST00000471752 TUBE1Q9UJT0 475 aa9.22□□□□□ -0.93
USP48-207ENST00000471752 ZNF215Q9UL58 517 aaPredicted RBP9.22□□□□□ -0.93
USP48-207ENST00000471752 PCDHGC5Q9Y5F6 944 aa9.22□□□□□ -0.93
USP48-207ENST00000471752 EMSYQ7Z589 1322 aa9.22□□□□□ -0.93
USP48-207ENST00000471752 H3BQ06 376 aaPredicted RBP9.21□□□□□ -0.94
USP48-207ENST00000471752 PRPF3O43395 683 aaKnown RBP9.21□□□□□ -0.94
USP48-207ENST00000471752 GNAT1P11488 350 aa9.21□□□□□ -0.94
USP48-207ENST00000471752 KLRC1P26715 233 aa9.21□□□□□ -0.94
USP48-207ENST00000471752 MRPS6P82932 125 aaKnown RBP9.21□□□□□ -0.94
USP48-207ENST00000471752 DLX2Q07687 328 aaPredicted RBP9.21□□□□□ -0.94
USP48-207ENST00000471752 GPM6BQ13491 265 aa9.21□□□□□ -0.94
USP48-207ENST00000471752 TCEAL5Q5H9L2 206 aa9.21□□□□□ -0.94
USP48-207ENST00000471752 MTHFD1LQ6UB35 978 aa9.21□□□□□ -0.94
USP48-207ENST00000471752 RPAINQ86UA6 219 aa9.21□□□□□ -0.94
USP48-207ENST00000471752 GIMAP8Q8ND71 665 aaPredicted RBP9.21□□□□□ -0.94
USP48-207ENST00000471752 CCDC136Q96JN2 1154 aa9.21□□□□□ -0.94
USP48-207ENST00000471752 YME1L1Q96TA2 773 aa9.21□□□□□ -0.94
USP48-207ENST00000471752 SLC26A6Q9BXS9 759 aa9.21□□□□□ -0.94
USP48-207ENST00000471752 AGXT2Q9BYV1 514 aa9.21□□□□□ -0.94
USP48-207ENST00000471752 UPF3BQ9BZI7 483 aaKnown RBP9.21□□□□□ -0.94
USP48-207ENST00000471752 ALG13Q9NP73 1137 aaKnown RBP9.21□□□□□ -0.94
USP48-207ENST00000471752 PADI3Q9ULW8 664 aa9.21□□□□□ -0.94
USP48-207ENST00000471752 TRPC6Q9Y210 931 aa9.21□□□□□ -0.94
USP48-207ENST00000471752 NOC2LQ9Y3T9 749 aaKnown RBP9.21□□□□□ -0.94
USP48-207ENST00000471752 COL4A6Q14031 1691 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 POTEB3A0JP26 581 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 TMEM150BA6NC51 233 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 H3BNC9 293 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 MAFGO15525 162 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 LINC01565O15544 149 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 ZNF862O60290 1169 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 CYP3A4P08684 503 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 IL9P15248 144 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 KCNA5P22460 613 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 ZNF76P36508 570 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 LTBRP36941 435 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 STK3Q13188 491 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 NPY5RQ15761 445 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 UGCGQ16739 394 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 PAN2Q504Q3 1202 aaKnown RBP9.2□□□□□ -0.94
USP48-207ENST00000471752 BLOC1S2Q6QNY1 142 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 POTEBQ6S5H4 581 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 PLPPR4Q7Z2D5 763 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 ZNF689Q96CS4 500 aaPredicted RBP9.2□□□□□ -0.94
USP48-207ENST00000471752 IL17RAQ96F46 866 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 CDHR1Q96JP9 859 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 SH2D3AQ9BRG2 576 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 ZMYND12Q9H0C1 365 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 UBE2ZQ9H832 354 aaPredicted RBP9.2□□□□□ -0.94
USP48-207ENST00000471752 GINS2Q9Y248 185 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 PCDHA2Q9Y5H9 948 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 MRPL42Q9Y6G3 142 aaKnown RBP9.2□□□□□ -0.94
USP48-207ENST00000471752 NFASCO94856 1347 aa9.2□□□□□ -0.94
USP48-207ENST00000471752 IPO5O00410 1097 aaKnown RBP9.19□□□□□ -0.94
USP48-207ENST00000471752 BACH1O14867 736 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 MSH4O15457 936 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 EFCAB14O75071 495 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 CAND2O75155 1236 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 CSDE1O75534 798 aaKnown RBP9.19□□□□□ -0.94
USP48-207ENST00000471752 FOSP01100 380 aaPredicted RBP9.19□□□□□ -0.94
USP48-207ENST00000471752 VTNP04004 478 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 COL9A1P20849 921 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 IRS1P35568 1242 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 BMPR1AP36894 532 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 EVCP57679 992 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 FGD1P98174 961 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 RBM10P98175 930 aaKnown RBP9.19□□□□□ -0.94
USP48-207ENST00000471752 KRT32Q14532 448 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 CLUL1Q15846 466 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 KIZQ2M2Z5 673 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 PRR16Q569H4 304 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 FAM102BQ5T8I3 360 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 PPP1R18Q6NYC8 613 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 TAF2Q6P1X5 1199 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 ATP8B4Q8TF62 1192 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 SDF4Q9BRK5 362 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 ZNF577Q9BSK1 485 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 CELF4Q9BZC1 486 aaKnown RBP9.19□□□□□ -0.94
USP48-207ENST00000471752 AZI2Q9H6S1 392 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 ZSWIM6Q9HCJ5 1215 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 C11orf16Q9NQ32 467 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 COL4A4P53420 1690 aaPredicted RBP9.19□□□□□ -0.94
USP48-207ENST00000471752 MICAL3Q7RTP6 2002 aa9.19□□□□□ -0.94
USP48-207ENST00000471752 FAM86C2PA6NEL3 165 aa9.18□□□□□ -0.94
USP48-207ENST00000471752 RRN3P2A6NIE6 340 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms