RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 RBM23Q86U06 439 aaKnown RBP6.23□□□□□ -1.41
PTPN4-209ENST00000469511 ERC1Q8IUD2 1116 aa6.23□□□□□ -1.41
PTPN4-209ENST00000469511 IFNL3Q8IZI9 196 aa6.23□□□□□ -1.41
PTPN4-209ENST00000469511 CLASRPQ8N2M8 674 aaKnown RBP6.23□□□□□ -1.41
PTPN4-209ENST00000469511 CCDC155Q8N6L0 562 aa6.23□□□□□ -1.41
PTPN4-209ENST00000469511 C7orf31Q8N865 590 aa6.23□□□□□ -1.41
PTPN4-209ENST00000469511 VN1R2Q8NFZ6 395 aa6.23□□□□□ -1.41
PTPN4-209ENST00000469511 FEZF2Q8TBJ5 459 aa6.23□□□□□ -1.41
PTPN4-209ENST00000469511 SAMD11Q96NU1 681 aa6.23□□□□□ -1.41
PTPN4-209ENST00000469511 TRAIPQ9BWF2 469 aa6.23□□□□□ -1.41
PTPN4-209ENST00000469511 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.23□□□□□ -1.41
PTPN4-209ENST00000469511 VRTNQ9H8Y1 702 aa6.23□□□□□ -1.41
PTPN4-209ENST00000469511 RC3H2Q9HBD1 1191 aaKnown RBP6.23□□□□□ -1.41
PTPN4-209ENST00000469511 DDX41Q9UJV9 622 aaKnown RBP6.23□□□□□ -1.41
PTPN4-209ENST00000469511 STX8Q9UNK0 236 aa6.23□□□□□ -1.41
PTPN4-209ENST00000469511 FAM50BQ9Y247 325 aa6.23□□□□□ -1.41
PTPN4-209ENST00000469511 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.23□□□□□ -1.41
PTPN4-209ENST00000469511 USP15Q9Y4E8 981 aaPredicted RBP6.23□□□□□ -1.41
PTPN4-209ENST00000469511 FNDC1Q4ZHG4 1894 aaPredicted RBP6.23□□□□□ -1.41
PTPN4-209ENST00000469511 WDR87Q6ZQQ6 2873 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 C5orf67F2Z3F1 127 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 PER2O15055 1255 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 EFCAB14O75071 495 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 F2P00734 622 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 GH1P01241 217 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 APPP05067 770 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 ITGB1P05556 798 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 CASTP20810 708 aaKnown RBP6.22□□□□□ -1.41
PTPN4-209ENST00000469511 NBL1P41271 181 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 TDO2P48775 406 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 NDUFV1P49821 464 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 GATMP50440 423 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 SP2Q02086 613 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 PPARAQ07869 468 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 ELOAQ14241 798 aaKnown RBP6.22□□□□□ -1.41
PTPN4-209ENST00000469511 CCDC96Q2M329 555 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 HSDL1Q3SXM5 330 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 BRDTQ58F21 947 aaPredicted RBP6.22□□□□□ -1.41
PTPN4-209ENST00000469511 SYDE2Q5VT97 1194 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 BTNL9Q6UXG8 535 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 ERMP1Q7Z2K6 904 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 SERINC5Q86VE9 423 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 ADSSL1Q8N142 457 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 FIBCD1Q8N539 461 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 SMRP1Q8NCR6 262 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 EHBP1Q8NDI1 1231 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 RMDN1Q96DB5 314 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 KIF1BPQ96EK5 621 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 RIPOR3Q96MK2 946 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 CDK15Q96Q40 435 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 POP1Q99575 1024 aaKnown RBP6.22□□□□□ -1.41
PTPN4-209ENST00000469511 APOL5Q9BWW9 433 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 IFIH1Q9BYX4 1025 aaKnown RBP6.22□□□□□ -1.41
PTPN4-209ENST00000469511 SYNPO2Q9UMS6 1093 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 PLAGL2Q9UPG8 496 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 ACACBO00763 2458 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 RAD50Q92878 1312 aa6.22□□□□□ -1.41
PTPN4-209ENST00000469511 DNAH14Q0VDD8 3507 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 PATL2C9JE40 543 aaKnown RBP6.21□□□□□ -1.42
PTPN4-209ENST00000469511 RNF113AO15541 343 aaKnown RBP6.21□□□□□ -1.42
PTPN4-209ENST00000469511 PI15O43692 258 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 PARNO95453 639 aaKnown RBP6.21□□□□□ -1.42
PTPN4-209ENST00000469511 SLC19A1P41440 591 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 NRIP1P48552 1158 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 NOVP48745 357 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 COASYQ13057 564 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 NCOA4Q13772 614 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 DGKDQ16760 1214 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 USH1GQ495M9 461 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 GIMAP6Q6P9H5 292 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 RTN4RL1Q86UN2 441 aaPredicted RBP6.21□□□□□ -1.42
PTPN4-209ENST00000469511 DHX37Q8IY37 1157 aaKnown RBP6.21□□□□□ -1.42
PTPN4-209ENST00000469511 SPPL3Q8TCT6 385 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 SYTL5Q8TDW5 730 aaPredicted RBP6.21□□□□□ -1.42
PTPN4-209ENST00000469511 LINC01599Q8WXQ3 324 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 APPBP2Q92624 585 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 ZNF689Q96CS4 500 aaPredicted RBP6.21□□□□□ -1.42
PTPN4-209ENST00000469511 IL17RAQ96F46 866 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 CNTNAP3BQ96NU0 1288 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 KCTD15Q96SI1 283 aaPredicted RBP6.21□□□□□ -1.42
PTPN4-209ENST00000469511 PRRX2Q99811 253 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 TMEM47Q9BQJ4 181 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 C16orf70Q9BSU1 422 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 CNTNAP3Q9BZ76 1288 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 UBA5Q9GZZ9 404 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 RNPEPQ9H4A4 650 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 PLA2G2EQ9NZK7 142 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 USTQ9Y2C2 406 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 MRPL42Q9Y6G3 142 aaKnown RBP6.21□□□□□ -1.42
PTPN4-209ENST00000469511 FANCMQ8IYD8 2048 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 OTOGLQ3ZCN5 2332 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 CACNA1IQ9P0X4 2223 aa6.21□□□□□ -1.42
PTPN4-209ENST00000469511 VPS13AQ96RL7 3174 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 EVPLQ92817 2033 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 LOC102724159A0A0B4J2E5 919 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 WNT7AO00755 349 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 ENPP3O14638 875 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 PPFIA3O75145 1194 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 BRD1O95696 1058 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 CHRNA1P02708 482 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms