RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 IL17AQ16552 155 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 LY6KQ17RY6 165 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 RASIP1Q5U651 963 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 IL31RAQ8NI17 732 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 NSUN6Q8TEA1 469 aaKnown RBP13.22□□□□□ -0.29
USP54-209ENST00000464635 MYLIPQ8WY64 445 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 SYMPKQ92797 1274 aaKnown RBP13.22□□□□□ -0.29
USP54-209ENST00000464635 VWCEQ96DN2 955 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 GSDMAQ96QA5 445 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 PPP1R9BQ96SB3 815 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 MTG1Q9BT17 334 aaPredicted RBP13.22□□□□□ -0.29
USP54-209ENST00000464635 TMEM60Q9H2L4 133 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 IL23AQ9NPF7 189 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 PXMP2Q9NR77 195 aa13.22□□□□□ -0.29
USP54-209ENST00000464635 TET1Q8NFU7 2136 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 B4DLN1 442 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 RBAK-RBAKDNI3L0D1 243 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 SMC2O95347 1197 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 DNAJB2P25686 324 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 HOXA13P31271 388 aaPredicted RBP13.21□□□□□ -0.29
USP54-209ENST00000464635 PBX2P40425 430 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 UBA7P41226 1012 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 GRIN1Q05586 938 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 CCDC173Q0VFZ6 552 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 TTLL4Q14679 1199 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 POSTNQ15063 836 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 CALCRLQ16602 461 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 NBPF20Q3BBV1 942 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 FAM47CQ5HY64 1035 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 ARHGEF16Q5VV41 709 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 XRRA1Q6P2D8 792 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 NIPA1Q7RTP0 329 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 CKAP2LQ8IYA6 745 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 CEP57L1Q8IYX8 460 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 AFG1LQ8WV93 481 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 SCLYQ96I15 445 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 KCNMB3Q9NPA1 279 aa13.21□□□□□ -0.29
USP54-209ENST00000464635 CXXC1Q9P0U4 656 aaPredicted RBP13.21□□□□□ -0.29
USP54-209ENST00000464635 DDX25Q9UHL0 483 aaKnown RBP13.21□□□□□ -0.29
USP54-209ENST00000464635 CDH23Q9H251 3354 aa13.21□□□□□ -0.3
USP54-209ENST00000464635 CHD9Q3L8U1 2897 aa13.21□□□□□ -0.3
USP54-209ENST00000464635 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.2□□□□□ -0.3
USP54-209ENST00000464635 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.2□□□□□ -0.3
USP54-209ENST00000464635 NR3C2P08235 984 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 MMP3P08254 477 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 MUTP22033 750 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 ZNF165P49910 485 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 ARHGAP4P98171 946 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 STXBP2Q15833 593 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 HYIQ5T013 277 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 CNNM4Q6P4Q7 775 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 PSRC1Q6PGN9 363 aaPredicted RBP13.2□□□□□ -0.3
USP54-209ENST00000464635 USP17L6PQ6QN14 398 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 EPSTI1Q96J88 318 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 ZFP91Q96JP5 570 aaPredicted RBP13.2□□□□□ -0.3
USP54-209ENST00000464635 PDLIM2Q96JY6 352 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 IWS1Q96ST2 819 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 PDCD2LQ9BRP1 358 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 SEZ6LQ9BYH1 1024 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 LRRC27Q9C0I9 530 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 DISC1Q9NRI5 854 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 TMEM260Q9NX78 707 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 STK17AQ9UEE5 414 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 DACH1Q9UI36 760 aa13.2□□□□□ -0.3
USP54-209ENST00000464635 FRMPD4Q14CM0 1322 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 IKBKBO14920 756 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 SORBS3O60504 671 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 RGS20O76081 388 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 GH1P01241 217 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 CHMP4BP1P59074 171 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 AMPD3Q01432 767 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 UBE2SQ16763 222 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 HS1BP3Q53T59 392 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 MLKLQ8NB16 471 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 HERVK_113Q902F9 699 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 KAT2BQ92831 832 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 PBX4Q9BYU1 374 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 KBTBD4Q9NVX7 518 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 SERTAD1Q9UHV2 236 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 DDX41Q9UJV9 622 aaKnown RBP13.19□□□□□ -0.3
USP54-209ENST00000464635 PCDHA12Q9UN75 941 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 UNC80Q8N2C7 3258 aa13.19□□□□□ -0.3
USP54-209ENST00000464635 TMEM265A0A087WTH1 108 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 SMTNL1A8MU46 457 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 MYCLP12524 364 aaPredicted RBP13.18□□□□□ -0.3
USP54-209ENST00000464635 SETQ01105 290 aaPredicted RBP13.18□□□□□ -0.3
USP54-209ENST00000464635 GRIN2CQ14957 1233 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 IQCB1Q15051 598 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 PGM5Q15124 567 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 ANO6Q4KMQ2 910 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 BRDTQ58F21 947 aaPredicted RBP13.18□□□□□ -0.3
USP54-209ENST00000464635 RRAGBQ5VZM2 374 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 PDXDC2PQ6P474 469 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 NFRKBQ6P4R8 1299 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 USP49Q70CQ1 688 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 OTOP2Q7RTS6 562 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 HAS1Q92839 578 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 SMARCE1Q969G3 411 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 TIFAQ96CG3 184 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 CALML4Q96GE6 196 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms