RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 SDF4Q9BRK5 362 aa25.84■■□□□ 1.73
USP4-208ENST00000464168 ALG13Q9NP73 1137 aaKnown RBP25.84■■□□□ 1.73
USP4-208ENST00000464168 MRPL42Q9Y6G3 142 aaKnown RBP25.84■■□□□ 1.73
USP4-208ENST00000464168 FOSP01100 380 aaPredicted RBP25.83■■□□□ 1.73
USP4-208ENST00000464168 MMP1P03956 469 aa25.83■■□□□ 1.73
USP4-208ENST00000464168 GTF2F1P35269 517 aaKnown RBP eCLIP25.83■■□□□ 1.73
USP4-208ENST00000464168 NAPAP54920 295 aa25.83■■□□□ 1.73
USP4-208ENST00000464168 NPAS4Q8IUM7 802 aa25.83■■□□□ 1.73
USP4-208ENST00000464168 TEX2Q8IWB9 1127 aa25.83■■□□□ 1.73
USP4-208ENST00000464168 CMTR2Q8IYT2 770 aaKnown RBP25.83■■□□□ 1.73
USP4-208ENST00000464168 CELF4Q9BZC1 486 aaKnown RBP25.83■■□□□ 1.73
USP4-208ENST00000464168 AGO4Q9HCK5 861 aaKnown RBP25.83■■□□□ 1.73
USP4-208ENST00000464168 V9GY48 417 aaPredicted RBP25.83■■□□□ 1.73
USP4-208ENST00000464168 IGSF9BQ9UPX0 1349 aa25.83■■□□□ 1.73
USP4-208ENST00000464168 M0QZ92 97 aa25.82■■□□□ 1.72
USP4-208ENST00000464168 MEIS1O00470 390 aa25.82■■□□□ 1.72
USP4-208ENST00000464168 DCXO43602 365 aa25.82■■□□□ 1.72
USP4-208ENST00000464168 ATG7O95352 703 aa25.82■■□□□ 1.72
USP4-208ENST00000464168 CLUL1Q15846 466 aa25.82■■□□□ 1.72
USP4-208ENST00000464168 P2RX5Q93086 422 aa25.82■■□□□ 1.72
USP4-208ENST00000464168 RBM28Q9NW13 759 aaKnown RBP25.82■■□□□ 1.72
USP4-208ENST00000464168 BRPF3Q9ULD4 1205 aa25.82■■□□□ 1.72
USP4-208ENST00000464168 SMIM35A0A1B0GVV1 85 aa25.81■■□□□ 1.72
USP4-208ENST00000464168 CSPG5O95196 566 aa25.81■■□□□ 1.72
USP4-208ENST00000464168 DNAJB1P25685 340 aa25.81■■□□□ 1.72
USP4-208ENST00000464168 ADCY7P51828 1080 aa25.81■■□□□ 1.72
USP4-208ENST00000464168 EXOSC10Q01780 885 aaKnown RBP25.81■■□□□ 1.72
USP4-208ENST00000464168 SMAD2Q15796 467 aaKnown RBP25.81■■□□□ 1.72
USP4-208ENST00000464168 PPP1R18Q6NYC8 613 aa25.81■■□□□ 1.72
USP4-208ENST00000464168 MTHFD1LQ6UB35 978 aa25.81■■□□□ 1.72
USP4-208ENST00000464168 NME8Q8N427 588 aa25.81■■□□□ 1.72
USP4-208ENST00000464168 ANO3Q9BYT9 981 aa25.81■■□□□ 1.72
USP4-208ENST00000464168 TMX1Q9H3N1 280 aa25.81■■□□□ 1.72
USP4-208ENST00000464168 IGFLR1Q9H665 355 aa25.81■■□□□ 1.72
USP4-208ENST00000464168 KDM3AQ9Y4C1 1321 aa25.81■■□□□ 1.72
USP4-208ENST00000464168 ATG2AQ2TAZ0 1938 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 IGKV6D-21A0A0A0MT36 114 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 STXBP3O00186 592 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 LINC01565O15544 149 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 TBX10O75333 385 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 ITGB1P05556 798 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 SCG2P13521 617 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 KRT76Q01546 638 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 PAK2Q13177 524 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 ADAM15Q13444 863 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 NAALADL2Q58DX5 795 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 SPPL3Q8TCT6 385 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 TCEANC2Q96MN5 208 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 NEK1Q96PY6 1258 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 TMEM260Q9NX78 707 aa25.8■■□□□ 1.72
USP4-208ENST00000464168 SMCO2A6NFE2 343 aa25.79■■□□□ 1.72
USP4-208ENST00000464168 MBTPS2O43462 519 aa25.79■■□□□ 1.72
USP4-208ENST00000464168 CCNE2O96020 404 aa25.79■■□□□ 1.72
USP4-208ENST00000464168 STAG3L1P0CL83 205 aa25.79■■□□□ 1.72
USP4-208ENST00000464168 IRS1P35568 1242 aa25.79■■□□□ 1.72
USP4-208ENST00000464168 SREBF1P36956 1147 aa25.79■■□□□ 1.72
USP4-208ENST00000464168 SLC26A2P50443 739 aa25.79■■□□□ 1.72
USP4-208ENST00000464168 RTN1Q16799 776 aa25.79■■□□□ 1.72
USP4-208ENST00000464168 PAN2Q504Q3 1202 aaKnown RBP25.79■■□□□ 1.72
USP4-208ENST00000464168 RNF20Q5VTR2 975 aa25.79■■□□□ 1.72
USP4-208ENST00000464168 KLHL23Q8NBE8 558 aa25.79■■□□□ 1.72
USP4-208ENST00000464168 UIMC1Q96RL1 719 aa25.79■■□□□ 1.72
USP4-208ENST00000464168 BARHL2Q9NY43 387 aa25.79■■□□□ 1.72
USP4-208ENST00000464168 ZBTB43O43298 467 aa25.78■■□□□ 1.72
USP4-208ENST00000464168 KLRC1P26715 233 aa25.78■■□□□ 1.72
USP4-208ENST00000464168 CLK2P49760 499 aaKnown RBP25.78■■□□□ 1.72
USP4-208ENST00000464168 TMEM266Q2M3C6 531 aa25.78■■□□□ 1.72
USP4-208ENST00000464168 ABHD15Q6UXT9 468 aa25.78■■□□□ 1.72
USP4-208ENST00000464168 DHX32Q7L7V1 743 aaKnown RBP25.78■■□□□ 1.72
USP4-208ENST00000464168 FAM217BQ9NTX9 383 aaPredicted RBP25.78■■□□□ 1.72
USP4-208ENST00000464168 hCG_1984214I3L0E3 225 aa25.77■■□□□ 1.72
USP4-208ENST00000464168 GATMP50440 423 aa25.77■■□□□ 1.72
USP4-208ENST00000464168 AP3B2Q13367 1082 aa25.77■■□□□ 1.72
USP4-208ENST00000464168 SMAD4Q13485 552 aaKnown RBP25.77■■□□□ 1.72
USP4-208ENST00000464168 CSPP1Q1MSJ5 1256 aa25.77■■□□□ 1.72
USP4-208ENST00000464168 NIPA1Q7RTP0 329 aa25.77■■□□□ 1.72
USP4-208ENST00000464168 KIAA0319LQ8IZA0 1049 aa25.77■■□□□ 1.72
USP4-208ENST00000464168 ZNF713Q8N859 430 aaPredicted RBP25.77■■□□□ 1.72
USP4-208ENST00000464168 CDHR5Q9HBB8 845 aa25.77■■□□□ 1.72
USP4-208ENST00000464168 CD207Q9UJ71 328 aa25.77■■□□□ 1.72
USP4-208ENST00000464168 DDX39AO00148 427 aaKnown RBP25.76■■□□□ 1.71
USP4-208ENST00000464168 HBP1O60381 514 aa25.76■■□□□ 1.71
USP4-208ENST00000464168 ADGRD2Q7Z7M1 963 aa25.76■■□□□ 1.71
USP4-208ENST00000464168 RASEFQ8IZ41 740 aa25.76■■□□□ 1.71
USP4-208ENST00000464168 ATP8B4Q8TF62 1192 aa25.76■■□□□ 1.71
USP4-208ENST00000464168 UPF3BQ9BZI7 483 aaKnown RBP25.76■■□□□ 1.71
USP4-208ENST00000464168 GLT8D2Q9H1C3 349 aa25.76■■□□□ 1.71
USP4-208ENST00000464168 WDFY4Q6ZS81 3184 aa25.75■■□□□ 1.71
USP4-208ENST00000464168 FAM86B1E9PN63 330 aa25.75■■□□□ 1.71
USP4-208ENST00000464168 BACH1O14867 736 aa25.75■■□□□ 1.71
USP4-208ENST00000464168 DHX15O43143 795 aaKnown RBP25.75■■□□□ 1.71
USP4-208ENST00000464168 MGEA5O60502 916 aa25.75■■□□□ 1.71
USP4-208ENST00000464168 FAM86B2P0C5J1 330 aa25.75■■□□□ 1.71
USP4-208ENST00000464168 CDC27P30260 824 aa25.75■■□□□ 1.71
USP4-208ENST00000464168 ZNF76P36508 570 aa25.75■■□□□ 1.71
USP4-208ENST00000464168 NFX1Q12986 1120 aaKnown RBP25.75■■□□□ 1.71
USP4-208ENST00000464168 ADCK5Q3MIX3 580 aa25.75■■□□□ 1.71
USP4-208ENST00000464168 TSGA10IPQ3SY00 556 aa25.75■■□□□ 1.71
USP4-208ENST00000464168 CCDC60Q8IWA6 550 aaPredicted RBP25.75■■□□□ 1.71
USP4-208ENST00000464168 POF1BQ8WVV4 589 aa25.75■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms