RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 OATP04181 439 aa25.67■■□□□ 1.7
CCDC28B-203ENST00000461819 ADAM17P78536 824 aa25.67■■□□□ 1.7
CCDC28B-203ENST00000461819 EPHA7Q15375 998 aa25.67■■□□□ 1.7
CCDC28B-203ENST00000461819 TMEM266Q2M3C6 531 aa25.67■■□□□ 1.7
CCDC28B-203ENST00000461819 TRAPPC12Q8WVT3 735 aa25.67■■□□□ 1.7
CCDC28B-203ENST00000461819 WNT8AQ9H1J5 351 aa25.67■■□□□ 1.7
CCDC28B-203ENST00000461819 EIF4ENIF1Q9NRA8 985 aaKnown RBP25.67■■□□□ 1.7
CCDC28B-203ENST00000461819 MTMR6Q9Y217 621 aa25.67■■□□□ 1.7
CCDC28B-203ENST00000461819 COL1A2P08123 1366 aa25.67■■□□□ 1.7
CCDC28B-203ENST00000461819 ZNF862O60290 1169 aa25.66■■□□□ 1.7
CCDC28B-203ENST00000461819 PSMC5P62195 406 aa25.66■■□□□ 1.7
CCDC28B-203ENST00000461819 PTGDRQ13258 359 aa25.66■■□□□ 1.7
CCDC28B-203ENST00000461819 ZNF484Q5JVG2 852 aa25.66■■□□□ 1.7
CCDC28B-203ENST00000461819 WNT8BQ93098 351 aa25.66■■□□□ 1.7
CCDC28B-203ENST00000461819 SCLYQ96I15 445 aa25.66■■□□□ 1.7
CCDC28B-203ENST00000461819 NRBP2Q9NSY0 501 aa25.66■■□□□ 1.7
CCDC28B-203ENST00000461819 EVPLQ92817 2033 aa25.66■■□□□ 1.7
CCDC28B-203ENST00000461819 POTEMA6NI47 508 aa25.65■■□□□ 1.7
CCDC28B-203ENST00000461819 LAD1O00515 517 aa25.65■■□□□ 1.7
CCDC28B-203ENST00000461819 DKC1O60832 514 aaKnown RBP eCLIP25.65■■□□□ 1.7
CCDC28B-203ENST00000461819 P4HBP07237 508 aaKnown RBP25.65■■□□□ 1.7
CCDC28B-203ENST00000461819 CSF2RAP15509 400 aa25.65■■□□□ 1.7
CCDC28B-203ENST00000461819 THPOP40225 353 aa25.65■■□□□ 1.7
CCDC28B-203ENST00000461819 TECP42680 631 aa25.65■■□□□ 1.7
CCDC28B-203ENST00000461819 QARSP47897 775 aaKnown RBP25.65■■□□□ 1.7
CCDC28B-203ENST00000461819 PPIGQ13427 754 aaKnown RBP eCLIP25.65■■□□□ 1.7
CCDC28B-203ENST00000461819 MARCH8Q5T0T0 291 aa25.65■■□□□ 1.7
CCDC28B-203ENST00000461819 SEPT9Q9UHD8 586 aaPredicted RBP25.65■■□□□ 1.7
CCDC28B-203ENST00000461819 CEP131Q9UPN4 1083 aa25.65■■□□□ 1.7
CCDC28B-203ENST00000461819 MBLAC1A4D2B0 266 aaPredicted RBP25.64■■□□□ 1.7
CCDC28B-203ENST00000461819 CKBP12277 381 aa25.64■■□□□ 1.7
CCDC28B-203ENST00000461819 SELPP16109 830 aa25.64■■□□□ 1.7
CCDC28B-203ENST00000461819 CYP4A11Q02928 519 aa25.64■■□□□ 1.7
CCDC28B-203ENST00000461819 RBL2Q08999 1139 aa25.64■■□□□ 1.7
CCDC28B-203ENST00000461819 RESTQ13127 1097 aa25.64■■□□□ 1.7
CCDC28B-203ENST00000461819 TAF2Q6P1X5 1199 aa25.64■■□□□ 1.7
CCDC28B-203ENST00000461819 LRRC8DQ7L1W4 858 aa25.64■■□□□ 1.7
CCDC28B-203ENST00000461819 C4orf32Q8N8J7 132 aa25.64■■□□□ 1.7
CCDC28B-203ENST00000461819 DYDC2Q96IM9 177 aa25.64■■□□□ 1.7
CCDC28B-203ENST00000461819 LXNQ9BS40 222 aa25.64■■□□□ 1.7
CCDC28B-203ENST00000461819 COLQQ9Y215 455 aaPredicted RBP25.64■■□□□ 1.7
CCDC28B-203ENST00000461819 ARID2Q68CP9 1835 aa25.64■■□□□ 1.7
CCDC28B-203ENST00000461819 BMP8BP34820 402 aa25.63■■□□□ 1.69
CCDC28B-203ENST00000461819 TRIM71Q2Q1W2 868 aaKnown RBP25.63■■□□□ 1.69
CCDC28B-203ENST00000461819 XKR3Q5GH77 459 aa25.63■■□□□ 1.69
CCDC28B-203ENST00000461819 RUFY4Q6ZNE9 571 aa25.63■■□□□ 1.69
CCDC28B-203ENST00000461819 NEK9Q8TD19 979 aa25.63■■□□□ 1.69
CCDC28B-203ENST00000461819 ZBTB10Q96DT7 871 aa25.63■■□□□ 1.69
CCDC28B-203ENST00000461819 EIF2AK1Q9BQI3 630 aaKnown RBP25.63■■□□□ 1.69
CCDC28B-203ENST00000461819 RGL1Q9NZL6 768 aa25.63■■□□□ 1.69
CCDC28B-203ENST00000461819 IQCF3P0C7M6 154 aa25.62■■□□□ 1.69
CCDC28B-203ENST00000461819 PDIA4P13667 645 aaKnown RBP25.62■■□□□ 1.69
CCDC28B-203ENST00000461819 KLRC1P26715 233 aa25.62■■□□□ 1.69
CCDC28B-203ENST00000461819 CTTNQ14247 550 aaKnown RBP25.62■■□□□ 1.69
CCDC28B-203ENST00000461819 MTHFD1LQ6UB35 978 aa25.62■■□□□ 1.69
CCDC28B-203ENST00000461819 RSPH3Q86UC2 560 aa25.62■■□□□ 1.69
CCDC28B-203ENST00000461819 FAM49AQ9H0Q0 323 aaPredicted RBP25.62■■□□□ 1.69
CCDC28B-203ENST00000461819 ZSCAN16Q9H4T2 348 aaPredicted RBP25.62■■□□□ 1.69
CCDC28B-203ENST00000461819 DDX11L8A8MPP1 907 aa25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 ZBTB42B2RXF5 422 aa25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 CAND2O75155 1236 aa25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 CTSHP09668 335 aa25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 PRPHP41219 470 aa25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 FXR2P51116 673 aaKnown RBP eCLIP25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 ATP2C1P98194 919 aaPredicted RBP25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 ZNF618Q5T7W0 954 aa25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 TPH2Q8IWU9 490 aa25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 ERMNQ8TAM6 284 aa25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 RAB34Q9BZG1 259 aa25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 PRO3102Q9H379 93 aa25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 ZSWIM4Q9H7M6 989 aa25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 IL23AQ9NPF7 189 aa25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 PCDHA2Q9Y5H9 948 aa25.61■■□□□ 1.69
CCDC28B-203ENST00000461819 SIP14410 1827 aa25.6■■□□□ 1.69
CCDC28B-203ENST00000461819 RFC2P35250 354 aa25.6■■□□□ 1.69
CCDC28B-203ENST00000461819 MTERF2Q49AM1 385 aa25.6■■□□□ 1.69
CCDC28B-203ENST00000461819 DTHD1Q6ZMT9 781 aa25.6■■□□□ 1.69
CCDC28B-203ENST00000461819 DEFB128Q7Z7B8 93 aa25.6■■□□□ 1.69
CCDC28B-203ENST00000461819 DNAJB3Q8WWF6 145 aa25.6■■□□□ 1.69
CCDC28B-203ENST00000461819 LOXHD1Q8IVV2 1947 aa25.59■■□□□ 1.69
CCDC28B-203ENST00000461819 TMEM150BA6NC51 233 aa25.59■■□□□ 1.69
CCDC28B-203ENST00000461819 C22orf31O95567 290 aa25.59■■□□□ 1.69
CCDC28B-203ENST00000461819 BMP15O95972 392 aa25.59■■□□□ 1.69
CCDC28B-203ENST00000461819 RPLP2P05387 115 aaKnown RBP25.59■■□□□ 1.69
CCDC28B-203ENST00000461819 ACRP10323 421 aa25.59■■□□□ 1.69
CCDC28B-203ENST00000461819 EPHB4P54760 987 aa25.59■■□□□ 1.69
CCDC28B-203ENST00000461819 FOXD4L5Q5VV16 416 aaPredicted RBP25.59■■□□□ 1.69
CCDC28B-203ENST00000461819 C4orf19Q8IY42 314 aa25.59■■□□□ 1.69
CCDC28B-203ENST00000461819 RPUSD2Q8IZ73 545 aaKnown RBP25.59■■□□□ 1.69
CCDC28B-203ENST00000461819 FOXD4L4Q8WXT5 416 aaPredicted RBP25.59■■□□□ 1.69
CCDC28B-203ENST00000461819 WRAP73Q9P2S5 460 aaPredicted RBP25.59■■□□□ 1.69
CCDC28B-203ENST00000461819 LRWD1Q9UFC0 647 aa25.59■■□□□ 1.69
CCDC28B-203ENST00000461819 RSPH10B2B2RC85 870 aa25.58■■□□□ 1.69
CCDC28B-203ENST00000461819 SLITRK3O94933 977 aa25.58■■□□□ 1.69
CCDC28B-203ENST00000461819 STBD1O95210 358 aa25.58■■□□□ 1.69
CCDC28B-203ENST00000461819 PARNO95453 639 aaKnown RBP25.58■■□□□ 1.69
CCDC28B-203ENST00000461819 RSPH10BP0C881 870 aa25.58■■□□□ 1.69
CCDC28B-203ENST00000461819 TBC1D8BQ0IIM8 1120 aa25.58■■□□□ 1.69
CCDC28B-203ENST00000461819 SF3A1Q15459 793 aaKnown RBP25.58■■□□□ 1.69
CCDC28B-203ENST00000461819 HAUS3Q68CZ6 603 aa25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms